ClearFinder: a Python GUI for annotating cells in cleared mouse brain

ClearFinder: a Python GUI for annotating cells in cleared mouse brain

Abstract Background Tissue clearing combined with light-sheet microscopy is gaining popularity among neuroscientists interested in unbiased assessment of their samples in 3D volume. However, the analysis of such data remains a challenge. ClearMap and CellFinder are tools for analyzing neuronal activ...

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Bibliographic Details
Main Authors: Stefan Pastore, Philipp Hillenbrand, Nils Molnar, Irina Kovlyagina, Monika Chanu Chongtham, Stanislav Sys, Beat Lutz, Margarita Tevosian, Susanne Gerber
Format: Article
Language:English
Published: BMC 2025-01-01
Series:BMC Bioinformatics
Subjects:
Tissue clearing
Atlas alignment
Cell count
3D volumetric imaging
Online Access:https://doi.org/10.1186/s12859-025-06039-x
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