Assessing microbiome engraftment extent following fecal microbiota transplant with q2-fmt.

We present q2-fmt, a QIIME 2 plugin that provides diverse methods for assessing the extent of microbiome engraftment following fecal microbiota transplant. The methods implemented here were informed by a recent literature review on approaches for assessing FMT engraftment, and cover aspects of engra...

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Bibliographic Details
Main Authors: Chloe Herman, Evan Bolyen, Anthony Simard, Liz Gehret, J Gregory Caporaso
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2025-07-01
Series:PLoS Computational Biology
Online Access:https://doi.org/10.1371/journal.pcbi.1013299
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