Comprehensive pathogen identification and antimicrobial resistance prediction from positive blood cultures using nanopore sequencing technology

Comprehensive pathogen identification and antimicrobial resistance prediction from positive blood cultures using nanopore sequencing technology

Abstract Background Blood cultures are essential for diagnosing bloodstream infections, but current phenotypic tests for antimicrobial resistance (AMR) provide limited information. Oxford Nanopore Technologies introduces nanopore sequencing with adaptive sampling, capable of real-time host genome de...

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Bibliographic Details
Main Authors: Po-Yu Liu, Han-Chieh Wu, Ying-Lan Li, Hung-Wei Cheng, Ci-Hong Liou, Feng-Jui Chen, Yu-Chieh Liao
Format: Article
Language:English
Published: BMC 2024-12-01
Series:Genome Medicine
Subjects:
Pathogen identification
Antimicrobial resistance prediction
Positive blood cultures
Real-time
Nanopore sequencing
Adaptive sampling
Online Access:https://doi.org/10.1186/s13073-024-01416-2
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https://doi.org/10.1186/s13073-024-01416-2

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