Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
Abstract Ribosome profiling data report on the distribution of translating ribosomes, at steady‐state, with codon‐level resolution. We present a robust method to extract codon translation rates and protein synthesis rates from these data, and identify causal features associated with elongation and t...
Saved in:
| Main Authors: | Cristina Pop, Silvi Rouskin, Nicholas T Ingolia, Lu Han, Eric M Phizicky, Jonathan S Weissman, Daphne Koller |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Springer Nature
2014-12-01
|
| Series: | Molecular Systems Biology |
| Subjects: | |
| Online Access: | https://doi.org/10.15252/msb.20145524 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
Efficient translation initiation dictates codon usage at gene start
by: Kajetan Bentele, et al.
Published: (2013-06-01) -
Lost in translation: conserved amino acid usage despite extreme codon bias in foraminifera
by: Auden E. Cote-L'Heureux, et al.
Published: (2025-04-01) -
Predicting viral host codon fitness and path shifting through tree-based learning on codon usage biases and genomic characteristics
by: Shuquan Su, et al.
Published: (2025-04-01) -
Comprehensive Analysis of Codon Usage Bias in Human Papillomavirus Type 51
by: Tan Xiaochun, et al.
Published: (2024-10-01) -
Analysis of codon usage bias in the mitochondrial genome of Pleurozia purpurea
by: Mengxue DU, et al.
Published: (2025-02-01)