SCUBA implements a storage format-agnostic API for single-cell data access in R [version 2; peer review: 2 approved, 1 approved with reservations]

SCUBA implements a storage format-agnostic API for single-cell data access in R [version 2; peer review: 2 approved, 1 approved with reservations]

While robust tools exist for the analysis of single-cell datasets in both Python and R, interoperability is limited, and analysis tools generally only accept one object class. Considerable programming expertise is required to integrate tools across package ecosystems into a comprehensive analysis, d...

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Bibliographic Details
Main Authors: Krysta L. Engel, Jairav Desai, Austin E. Gillen, William M. Showers, Craig T. Jordan, Clayton Smith
Format: Article
Language:English
Published: F1000 Research Ltd 2025-06-01
Series:F1000Research
Subjects:
single-cell sequencing
multimodal
software tools
R package
Python
visualization
eng
Online Access:https://f1000research.com/articles/13-1256/v2
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