Allen Human Brain Atlas and magnetic resonance imaging in schizophrenia by Tian-Cai Yan, Si-Wen Yu, Xian-Yang Wang, Lei Ren, Da Li, Wen-Yue Chu, Yan-Kun Han, Xin-Jiang Wang, Long-Biao Cui

“…One of the recent studies involved the Allen Human Brain Atlas in the imaging study of schizophrenia. …”
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Molecular architecture of the altered cortical complexity in autism by Makliya Mamat, Yiyong Chen, Wenwen Shen, Lin Li

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Gray matter volume abnormalities in vascular cognitive impairment and their association with gene expression profiles by Juanwei Ma, Kaizhong Xue, Xinyu Wang, Mengjing Cai, Xinli Wang, Jiaojiao Li, Linlin Song, He Wang, Yali Niu, Jing Wang, Zhaoxiang Ye, Jing Zhang, Feng Liu

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Transcriptional patterns of brain structural abnormalities in CSVD-related cognitive impairment by Haixia Mao, Min Xu, Hui Wang, Hui Wang, Yuankun Liu, Feng Wang, Feng Wang, Qianqian Gao, Songyun Zhao, Lin Ma, Xiaoyun Hu, Xiaoxuan Zhang, Guangjun Xi, Guangjun Xi, Xiangming Fang, Yachen Shi, Yachen Shi

“…Transcriptome-neuroimaging spatial correlation analysis was carried out in combination with the Allen Human Brain Atlas to explore gene expression profiles associated with changes in cortical morphology in CSVD-related cognitive impairment.ResultsVBM analysis demonstrated extensive decreased GMV in CSVD-related cognitive impairment in the bilateral temporal lobe and thalamus, especially the hippocampus, thalamus, parahippocampus, and fusiform, and the left temporal lobe showed a more severe atrophy than the right temporal lobe. …”
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Neuronal diversity and stereotypy at multiple scales through whole brain morphometry by Yufeng Liu, Shengdian Jiang, Yingxin Li, Sujun Zhao, Zhixi Yun, Zuo-Han Zhao, Lingli Zhang, Gaoyu Wang, Xin Chen, Linus Manubens-Gil, Yuning Hang, Qiaobo Gong, Yuanyuan Li, Penghao Qian, Lei Qu, Marta Garcia-Forn, Wei Wang, Silvia De Rubeis, Zhuhao Wu, Pavel Osten, Hui Gong, Michael Hawrylycz, Partha Mitra, Hongwei Dong, Qingming Luo, Giorgio A. Ascoli, Hongkui Zeng, Lijuan Liu, Hanchuan Peng

“…We registered 204 mouse brains of three major imaging modalities to the Allen Common Coordinate Framework (CCF) atlas, annotated 182,497 neuronal cell bodies, modeled 15,441 dendritic microenvironments, characterized the full morphology of 1876 neurons along with their axonal motifs, and detected 2.63 million axonal varicosities that indicate potential synaptic sites. …”
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Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization by Martin Øvsthus, Maaike M. H. van Swieten, Maja A. Puchades, Chiara Tocco, Michèle Studer, Jan G. Bjaalie, Trygve B. Leergaard

“…Several public collections of mouse- and rat- brain tract-tracing data are available, with the Allen mouse brain connectivity atlas being most prominent. …”
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Association of cortical macrostructural and microstructural changes with cognitive performance and gene expression in subcortical ischemic vascular disease patients with cognitive... by Jing Huang, Runtian Cheng, Xiaoshuang Liu, Li Chen, Tianyou Luo

“…Moreover, the associations between the significant neuroimaging values and the cognitive scores and gene expression values from Allen Human Brain Atlas database were evaluated using partial least squares regression and partial correlation analysis. …”
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Genetic and neurochemical profiles underlying cortical morphometric vulnerability to Parkinson’s disease by Su Yan, Jun Lu, Bingfang Duan, Hongquan Zhu, Tian Tian, Yuanyuan Qin, Yuanhao Li, Wenzhen Zhu

“…Then we performed gene-category enrichment and spatial correlation analyses to evaluate the specific correspondence between cortical alteration in PD and genetic expression from the Allen Human Brain Atlas and normative neurotransmitter atlases from Neuromaps. …”
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Key regions aberrantly connected within cerebello-thalamo-cortical circuit and their genetic mechanism in schizophrenia: an fMRI meta-analysis and transcriptome study by Yarui Wei, Ziyu Wang, Kangkang Xue, Xiaoyu Niu, Longyao Ma, Shaoqiang Han, Baohong Wen, Yong Zhang, Huafu Chen, Jingliang Cheng

“…Gene annotation analysis was performed to identify genes over-expressed in these regions by using the Allen Human Brain Atlas, followed by a set of gene functional feature analyses. 19 studies (1333 patients and 1174 healthy controls) were included in this meta-analysis. …”
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Structural and functional alterations in MRI-negative drug-resistant epilepsy and associated gene expression features by Ting Liu, Sheng Wang, Yingjie Tang, Sisi Jiang, Huixia Lin, Fei Li, Dezhong Yao, Xian Zhu, Cheng Luo, Qifu Li

“…Gene expression data from Allen human brain atlas and GMV/ReHo were evaluated to obtain drug resistance-related and epilepsy-associated gene expression and compared with real transcriptional data in blood. …”
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Decreased prefrontal glutamatergic function is associated with a reduced astrocyte-related gene expression in treatment-resistant depression by Masataka Wada, Shinichiro Nakajima, Shiori Honda, Mayuko Takano, Keita Taniguchi, Saki Homma, Risako Ueda, Yui Tobari, Yu Mimura, Shinya Fujii, Masaru Mimura, Yoshihiro Noda

“…Furthermore, we conducted spatial correlation analyses interregionally between ICF glutamatergic activity and cell-specific gene expression levels employing the Allen Human Brain Atlas dataset. DLPFC-ICF at the sensor level was not significantly different between the two groups, whereas DLPFC-ICF at the source level was reduced in the TRD group compared with the HC group (p = 0.026). …”
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Association of genetic variations in the NOS1 gene with insomnia, sleep duration and obstructive sleep apnea-related clinical quantitative traits by YUAN Haolin, LI Niannian, HU Junhui, SHEN Jinhong, GAO Zhenfei, GUAN Jian, LIU Feng, YIN Shankai

“…Objective·To explore the correlation between the genetic variations rs7305526 and rs11615756 of nitric oxide synthase 1 (NOS1) and the human sleep traits, including insomnia, sleep duration, and clinical quantitative traits related to obstructive sleep apnea (OSA).Methods·The NOS1 gene expression pattern at the whole-brain level using the Allen Human Brain Atlas dataset was analyzed. …”
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