The Middle to Late Triassic of Central Saudi Arabia with emphasis on the Jilh Formation. Part II: sequence stratigraphy, depositional and structural history, correlations and paleogeography by Le Nindre, Yves-Michel, Davies, Roger Brett, Issautier, Benoit, Krystyn, Leopold, Vaslet, Denis, Vrielynck, Bruno, Memesh, Abdullah

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Detection of Dengue Virus-Specific IgM and IgG Antibodies through Peptide Sequences of Envelope and NS1 Proteins for Serological Identification by Pradeep Kumar Nagar, Deepali Savargaonkar, Anupkumar R. Anvikar

“…Peptide sequences were synthesized chemically by solid-phase peptide synthesis technique. …”
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Unravelling the transcriptomic symphony of muscle ageing: key pathways and hub genes altered by ageing and caloric restriction in rat muscle revealed by RNA sequencing by Gulam Altab, Brian J. Merry, Charles W. Beckett, Priyanka Raina, Inês Lopes, Katarzyna Goljanek-Whysall, João Pedro de Magalhães

“…Hence, we employed high-throughput RNA sequencing to survey the global changes in protein-coding gene expression occurring in skeletal muscle with age. …”
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The geometry evolution of Early Paleozoic carbonate platform in the southwestern Tarim Basin, China: evidence from sequence stratigraphic analysis and seismic forward modeling by Jie Li, Jie Li, Zicheng Cao, Feng Geng, Suju Yang, Xuguang Sha, Mingjie Lan, Shenghou Wang, Yongchao Lu, Yangbo Lu, Daqing Tang, Zhao Zhang, Fang Hao

“…This study emphasizes the potential of the integration of sequence stratigraphic analyses and seismic forward modeling as a seismic workflow for retrieving the stratigraphic architecture and platform geometry.…”
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Whole-genome sequencing-based characterization of Salmonella enterica Serovar Enteritidis and Kentucky isolated from laying hens in northwest of Iran, 2022–2023 by Shirin Vakili, Mehri Haeili, Adel Feizi, Kiarash Moghaddasi, Maryam Omrani, Arash Ghodousi, Daniela Maria Cirillo

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Whole-genome sequencing and secondary metabolite exploration of the novel Bacillus velezensis BN with broad-spectrum antagonistic activity against fungal plant pathogens by Yanli Zheng, Tongshu Liu, Ziyu Wang, Xu Wang, Haiyan Wang, Ying Li, Wangshan Zheng, Shiyu Wei, Yan Leng, Jiajia Li, Yan Yang, Yang Liu, Zhaoyu Li, Qiang Wang, Qiang Wang, Yongqiang Tian

“…The complete genome sequence of B. velezensis BN consists of a circular chromosome with a length of 3,929,791 bp, includes 3,747 protein-coding genes, 81 small RNAs, 27 rRNAs, and 86 tRNAs. …”
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Diversity Assessment of Some Sesame (Sesamum indicum L.) Genotypes Cultivated in Northern Ghana Using Morphological and Simple Sequence Repeat (SSR) Markers by Raphael Adu-Gyamfi, Ruth Prempeh, Issahaku Zakaria

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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms by Barnabé, Christian, Sempéré, Guilhem, Manzanilla, Vincent, Millan, Joel Moo, Amblard-Rambert, Antoine, Waleckx, Etienne

“…In our workflow, VSEARCH is utilized for processing fastq files derived from amplicon-based Next-Generation Sequencing data. This software is a versatile open-source tool for processing amplicon sequences, offering advantages such as high speed, efficient memory usage, and the ability to handle large datasets. …”
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High-throughput sequencing of 16S rRNA gene analysis reveal insights into abundance, diversity, and function of the gut microbiota in zebrafish exposed to triflumezopyrim by Ipsita Iswari Das, Bayasis M. Sharma, Madhusmita Mahapatra, Sipra Nayak, Aman Kumar Mohanty, Lakshman Sahoo, Rajesh Kumar, Jitendra Kumar Sundaray

“…Herein, we utilized 16S rRNA gene sequencing to reveal the aquatic eco-risk of triflumezopyrim in the gut microbiota of zebrafish. …”
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Integrating bulk and single-cell RNA sequencing data: unveiling RNA methylation and autophagy-related signatures in chronic obstructive pulmonary disease patients by Shi-Xia Liao, Lan-Ying Zhang, Ling-Mei Shi, Huai-Yu Hu, Yan-Hui Gu, Ting-Hua Wang, Yao Ouyang, Peng-Peng Sun

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Whole genome sequence of seaweed endophyte Bacillus halotolerans strain AUPP for antagonistic activity against Fusarium incarnatum causing chilli fruit rot by Hudson Ann Suji, Karuppiah Manikandan, Appusami Sudha, Arjunan Muthukumar, Chelladurai Jeyalakshmi, Muniyandi Charumathi, Manickam Rajesh, Thankaraj Suthin Raj

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Effect of forging sequence and heat treatment on microstructure of high-duty power-plant shaft made of Cr-Mo ultra-high strength steel by Skubisz P., Lisiecki Ł.

“…Using the Finite Element Modeling, the multi-stage sequence of upsetting and the cogging strain distribution were optimized to minimize the strain variation along the length to a range 2.2÷2.7, and correlated with the microstructure generated at each main stage on the large cross-sections of the shaft. …”
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Two Years of SARS-CoV-2 Omicron Genomic Evolution in Brazil (2022–2024): Subvariant Tracking and Assessment of Regional Sequencing Efforts by Ueric José Borges de Souza, Fernando Rosado Spilki, Amilcar Tanuri, Paulo Michel Roehe, Fabrício Souza Campos

“…This study examines the genomic diversity of SARS-CoV-2 in Brazil after the worst phase of the pandemic, the wider adoption of routine vaccination, and the abolishment of other non-pharmacological preventive measures from July 2022 to July 2024 using 55,951 sequences retrieved from the GISAID database. The analysis focuses on the correlation between confirmed COVID-19 cases, sequencing efforts across Brazilian states, and the distribution and evolution of viral lineages. …”
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Prediction of Water Consumption in Hospitals Based on a Modified Grey GM (0, 1∣sin) Model of Oscillation Sequence: The Example of Wuhan City by Han Zhou, Jiejun Huang, Yanbin Yuan, Biao Tang

“…Taking the hospitals in Wuhan City as an example and basing the analysis on the characteristics of actual water consumption, we proposed a modified grey GM (0, 1∣sin) model of oscillation sequence. Using the grey theory, the variable weight-strengthening buffer operator (VWSBO) was introduced into this model to weaken the interference of the disturbance term on the data sequence. …”
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Efficient identification of genomic insertions and surrounding regions in two transgenic maize events using third-generation single-molecule nanopore sequencing technology by Qing Liu, Qi Wang, Lihua Ning, Ziqi Chen, Chuang Zhang, Yang Liu, Buxuan Qian, Jia Guo, Yuejia Yin

Subjects: “…Nanopore single-molecule sequencing…”
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Model for Vaccine Design by Prediction of B-Epitopes of IEDB Given Perturbations in Peptide Sequence, In Vivo Process, Experimental Techniques, and Source or Host Organisms by Humberto González-Díaz, Lázaro G. Pérez-Montoto, Florencio M. Ubeira

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Sequencing effects of small-sided games and high-intensity interval training on physical and physiological performance of young soccer players during pre-season by Kharatzadeh Masoud, Morgans Ryland, Thapa Rohit K., Oliveira Rafael, Faramarzi Mohammad

“…Study aim: This experimental study investigated the sequencing effects of a small-sided games (SSG) protocol and highintensity interval training (HIIT) on the physical and physiological performance adaptation of soccer players, conducted over a fourteen-week of the pre-season.…”
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Impacts of different pig slurry application methods on soil quality indicators in a maize-soybean cropping sequence in the Sub-humid Pampas of Argentina by Vanesa Pegoraro, Cristian Cazorla, Omar Bachmeier, Tomás Baigorria, Mónica Boccolini, Jimena Ortiz, Claudio Lorenzon, Susana Hang, Marta Zubillaga

“…The objective of this study was to compare the effects of different PS application methods on the soil quality in a maize-soybean cropping sequence. Methods PS application methods were evaluated: acidified (AS), incorporated (IS), surface (SS), mineral fertilization (MF) and control (C). …”
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A comprehensive analysis to reveal the underlying molecular mechanisms of natural killer cell in thyroid carcinoma based on single-cell RNA sequencing data by Xiaoqiong Li, Kejiang Wang, Jiaxin Liu, Yan Li

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Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution” by Caitriona Brennan, Rodolfo A. Salido, Pedro Belda-Ferre, MacKenzie Bryant, Charles Cowart, Maria D. Tiu, Antonio Gonzalez, Daniel McDonald, Caitlin Tribelhorn, Amir Zarrinpar, Rob Knight

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