Swarm learning with weak supervision enables automatic breast cancer detection in magnetic resonance imaging by Oliver Lester Saldanha, Jiefu Zhu, Gustav Müller-Franzes, Zunamys I. Carrero, Nicholas R. Payne, Lorena Escudero Sánchez, Paul Christophe Varoutas, Sreenath Kyathanahally, Narmin Ghaffari Laleh, Kevin Pfeiffer, Marta Ligero, Jakob Behner, Kamarul A. Abdullah, Georgios Apostolakos, Chrysafoula Kolofousi, Antri Kleanthous, Michail Kalogeropoulos, Cristina Rossi, Sylwia Nowakowska, Alexandra Athanasiou, Raquel Perez-Lopez, Ritse Mann, Wouter Veldhuis, Julia Camps, Volkmar Schulz, Markus Wenzel, Sergey Morozov, Alexander Ciritsis, Christiane Kuhl, Fiona J. Gilbert, Daniel Truhn, Jakob Nikolas Kather

“…Methods In this study, we present an integrated pipeline combining weakly supervised learning—reducing the need for detailed annotations—with local AI model training via swarm learning (SL), which circumvents centralized data sharing. …”
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Bulk and single-cell transcriptome revealed the metabolic heterogeneity in human glioma by Yong Xiao, Mengjie Zhao, Ran Wang, Liang Liu, Chong Xiang, Taiping Li, Chunfa Qian, Hong Xiao, Hongyi Liu, Yuanjie Zou, Xianglong Tang, Kun Yang

“…Cell-cell communication analysis was performed at single-cell resolution using the R package CellChat and at spatial resolution using the standard stLearn pipeline. Results: Glioma samples were stratified into two prognostic subtypes. …”
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Performance Analysis of Costs and Implementation Time Using Earned Value Method on the Distribution Pipe Network Expansion in Samarinda City by Dedy Sugi Hartawan, Wateno Oetomo, Risma Marleno

“…Based on the background of this problem, the title of this research is Analysis of cost performance and implementation time using the EVM Method (Earned Value Method) in the Samarinda City Distribution Pipeline Network Expansion Work. This research was carried out with the aim of determining the cost and time for completing the project. …”
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Low-input redoxomics facilitates global identification of metabolic regulators of oxidative stress in the gut by Xina Xiao, Meng Hu, Li Gao, Huan Yuan, Baochen Chong, Yu Liu, Rou Zhang, Yanqiu Gong, Dan Du, Yong Zhang, Hao Yang, Xiaohui Liu, Yan Zhang, Huiyuan Zhang, Heng Xu, Yi Zhao, Wenbo Meng, Dan Xie, Peng Lei, Shiqian Qi, Yong Peng, Tao Tan, Yang Yu, Hongbo Hu, Biao Dong, Lunzhi Dai

“…By developing a low-input and user-friendly pipeline for the simultaneous profiling of five distinct cysteine (Cys) states, including free SH, total Cys oxidation (Sto), sulfenic acid (SOH), S-nitrosylation (SNO), and S-glutathionylation (SSG), we shed light on Cys redox modification stoichiometries and signaling with regional resolution in the aging gut of monkeys. …”
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Genomic and epidemiological analysis of SARS-CoV-2 variants isolated in Guinea: a routine sequencing implementation by Aminata Mbaye, Haby Diallo, Thibaut Armel Cherif Gnimadi, Kadio Jean Jacques Olivier Kadio, Abdoul Karim Soumah, Joel Balle Koivogui, Jean Louis Monemou, Moriba Kowa Povogui, Djiba Kaba, Castro Hounmenou, Laetitia Serrano, Christelle Butel, Nicolas Fernandez Nuñez, Nicole Vidal, Emilande Guichet, Eric Delaporte, Ahidjo Ayouba, Martine Peeters, Abdoulaye Toure, Alpha Kabinet Keita, AFROSCREEN Team

“…The sequences were then analyzed using the GeVarli pipeline to generate consensus sequences and variant calling. …”
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Safety, Tolerability, and Immunogenicity of the Invaplex_AR-Detox <i>Shigella</i> Vaccine Co-Administered with the dmLT Adjuvant in Dutch and Zambian Adults: Study Protoc... by Geert V. T. Roozen, Nsofwa Sukwa, Masuzyo Chirwa, Jessica A. White, Marcus Estrada, Nicole Maier, Kevin R. Turbyfill, Renee M. Laird, Akamol E. Suvarnapunya, Aicha Sayeh, Flavia D’Alessio, Candice Marion, Laura Pattacini, Marie-Astrid Hoogerwerf, Rajagopal Murugan, Manuela Terrinoni, Jan R. Holmgren, Sodiomon B. Sirima, Sophie Houard, Michelo Simuyandi, Meta Roestenberg

“…Besides strengthening the vaccine pipeline against a major diarrheal disease, another goal of the ShigaPlexIM project is to stimulate capacity building and strengthen global North-South relations in clinical research. …”
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A comparative study on disinfection effect of three different disinfectants for oral dental chair water lines (三种不同消毒剂对口腔综合治疗台水路消毒效果的比较)... by WANG Wenjuan (王文娟), LI Yajuan (李雅娟), LI Pei (李培), KONG Li (孔莉), WANG Ting (王婷)

“…Long-term use causes irreparable damage to the inner wall of the pipeline. Silver ionic disinfectant with 60 g/L hydrogen peroxide was optimal in controlling the total number of bacterial colonies and inhibiting bacterial growth time in oral dental chair water lines (DUWLs). …”
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Deep learning helps discriminate between autoimmune hepatitis and primary biliary cholangitis by Alessio Gerussi, Oliver Lester Saldanha, Giorgio Cazzaniga, Damiano Verda, Zunamys I. Carrero, Bastian Engel, Richard Taubert, Francesca Bolis, Laura Cristoferi, Federica Malinverno, Francesca Colapietro, Reha Akpinar, Luca Di Tommaso, Luigi Terracciano, Ana Lleo, Mauro Viganó, Cristina Rigamonti, Daniela Cabibi, Vincenza Calvaruso, Fabio Gibilisco, Nicoló Caldonazzi, Alessandro Valentino, Stefano Ceola, Valentina Canini, Eugenia Nofit, Marco Muselli, Julien Calderaro, Dina Tiniakos, Vincenzo L’Imperio, Fabio Pagni, Nicola Zucchini, Pietro Invernizzi, Marco Carbone, Jakob Nikolas Kather

“…This study investigates the use of a deep learning (DL)-based pipeline for the diagnosis of AIH and PBC to aid differential diagnosis. …”
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La gestion de l’eau à Bibracte (Saône-et-Loire), avant et après la Conquête romaine by Laetitia Borau

“…Their dimensions vary between 8 and 9 cm in diameter but some of them were as long as 15 cm. Pipeline sections made from the bellies of amphoras are also known. …”
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RNA-seq reproducibility of Pseudomonas aeruginosa in laboratory models of cystic fibrosis by Rebecca P. Duncan, Gina R. Lewin, Daniel M. Cornforth, Frances L. Diggle, Ananya Kapur, Dina A. Moustafa, Yasmin Hilliam, Jennifer M. Bomberger, Marvin Whiteley, Joanna B. Goldberg

“…In addition, while samples sequenced with different sequencing pipelines showed significantly more variance in expression profiles than between labs, gene expression was still highly reproducible between sequencing pipelines. …”
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Calculation of Temperature Fields and Stresses in Pipe-Lines by R. I. Esman

“…A mathematical model and a numerical solution of the problem pertaining to non-stationary temperature fields and profile temperature stresses in multi-layer heat pipelines of various application purposes are given and obtained in the paper.The developed mathematical model is applied for calculation of temperature fields and stresses in heat pipelines with the purpose of an efficient usage of heat-transfer agent power po-tential.…”
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FEATURES OF THE DEVELOPMENT OF THE OIL AND PIPE INDUSTRY AS OBJECT OF STUDY TO IDENTIFY STRATEGIC GUIDELINES FOR THEIR INTERACTION by A. Borozdin

“…The research topics in the article are the oil industry and the industry for the production of tubes for pipelines, two strategically important industries, to provide energy for the Russian Federation and the international export. …”
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Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection by Bert Bogaerts, Julien Van Braekel, Alexander Van Uffelen, Jolien D’aes, Maxime Godfroid, Thomas Delcourt, Michael Kelchtermans, Kato Milis, Nathalie Goeders, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Raf Winand, Kevin Vanneste

“…These pipelines include quality control, de novo assembly, sequence typing, antimicrobial resistance prediction and several relevant species-specific assays. …”
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Solu: a cloud platform for real-time genomic pathogen surveillance by Timo Saratto, Kerkko Visuri, Jonatan Lehtinen, Irene Ortega-Sanz, Jacob L. Steenwyk, Samuel Sihvonen

“…Despite advancements in bioinformatics pipelines, there are still significant challenges in terms of infrastructure, expertise, and security when it comes to continuous surveillance. …”
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An outlook on structural biology after AlphaFold: tools, limits and perspectives by Serena Rosignoli, Maddalena Pacelli, Francesca Manganiello, Alessandro Paiardini

“…This success has catalyzed the development of new software and pipelines aimed at incorporating AlphaFold's predictions, often focusing on addressing the algorithm's remaining challenges. …”
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Measuring. Monitoring. Management. Control by M.V. Sprindzuk, V.I. Bernik, A.P. Konchits

“…The emergence and importance of the research topic is substantiated by the colossal growth in the volume of accumulated and underprocessed medical information, the evolution of mathematical and algorithmic apparatus, and the need to improve existing data processing pipelines. The purpose of the work was to review and report the new classification and concepts of data interpretation proposed by the authors, as well as an experience in software development. …”

Optimum Geometric Position of Detectors Around Thick Hydrocarbon Pipes for Deposition Pattern Detection and Scale Thickness Measurement by Rasmieh Zeinavi Mianabi, Ataollah Rabiee, Mohsen Sharifzadeh

“…Ensuring flow with the increasing need to extract oil and gas from reservoirs is known as a big challenge, and in the meantime, scale deposition in pipelines is a major problem. Since scale deposition occurs in a short time, it is especially important to control and predict it in pipelines as soon as possible. …”
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Nord Stream methane leaks spread across 14% of Baltic waters by Martin Mohrmann, Louise C. Biddle, Gregor Rehder, Henry C. Bittig, Bastien Y. Queste

“…Abstract A suspected 443-486 kt of methane escaped from the Nord Stream pipelines in September 2022 at four explosion sites across three pipelines. …”
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Transitioning from wet lab to artificial intelligence: a systematic review of AI predictors in CRISPR by Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Andreas Dengel

“…Within the landscape of AI predictors in CRISPR-Cas9 multi-step process, it provides insights of representation learning methods, machine and deep learning methods trends, and performance values of existing 50 predictive pipelines. In the context of representation learning methods and classifiers/regressors, a thorough analysis of existing predictive pipelines is utilized for recommendations to develop more robust and precise predictive pipelines.…”
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Laminar Flow Processes of Fluid Energy Carries in Pipe Lines by R. I. Esman, L. I. Shoub

“…Various regimes of fluid motion in pipelines of heat-power units and equipment are considered in the paper.The presented dependencies can be used for practical calculations while transporting energy carriers for various application.…”
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