OryzaGP: rice gene and protein dataset for named-entity recognition by Pierre Larmande, Huy Do, Yue Wang

“…Text mining has become an important research method in biology, with its original purpose to extract biological entities, such as genes, proteins and phenotypic traits, to extend knowledge from scientific papers. …”
Get full text

Clustering Large-Scale Biomedical Data to Model Dynamic Accumulation Processes in Disease Progression and Anti-Microbial Resistance Evolution by Kazeem A. Dauda, Olav N. L. Aga, Iain G. Johnston

“…Existing approaches for accumulation modelling are typically limited either in the number of features they consider or their ability to characterise interactions between these features – a limitation for the large-scale genetic and/or phenotypic datasets often found in modern biomedical applications. …”
Get full text

Conditional similarity triplets enable covariate-informed representations of single-cell data by Chi-Jane Chen, Haidong Yi, Natalie Stanley

“…This integration of information disparate more robust predictions of clinical phenotypes and holds significant potential for enhancing diagnostic and treatment strategies.…”
Get full text

Very Elevated IgE, Atopy, and Severe Infection: A Genomics-Based Diagnostic Approach to a Spectrum of Diseases by A. Chin, S. Balasubramanyam, C. M. Davis

“…A spectrum of recurrent infections and atopy are hallmarks of elevated IgE with significant phenotypic overlap between each underlying condition. …”
Get full text

The dysregulation of PARP9 expression is linked to apoptosis and DNA damage in gastric cancer cells. by Yating Li, Xing Wang, Xiaolong Liu, Xiangjie Li, Jianling Zhang, Yulan Li

“…Cell lines with either knockdown or overexpression of PARP9 were established through lentiviral transduction, and the role of PARP9 in the malignant phenotypes of GC cells was validated via CCK8 assays, wound healing assays, clonogenic assays, and Transwell migration experiments. …”
Get full text

Epidemiologic trends of cleft lip and/or palate in Switzerland by Joël Beyeler, Anic Lauener, Christos Katsaros, Giorgio C. La Scala, Martin Degen

“…However, this knowledge is essential for better understanding the etiologies underlying the various cleft phenotypes and providing expectant parents with the best possible healthcare planning and counseling. …”
Get full text

Effects of D128N Mutation on OsSERK2 in Xa21-Mediated Immune Complex: An In Silico Study by Raghib Ishraq Alvy, M. H. M. Mubassir, Mohd Firdaus Abdul-Wahab, Salehhuddin Hamdan

“…These findings are expected to significantly contribute to the study of the structural basis of Xa21-mediated immunity and the first layer of plant defense mechanisms, thereby aiding further research on these structures and their phenotypic implications.…”
Get full text

Taxonomy and Polyphasic Characterization of Alkaline Amylase Producing Marine Actinomycete Streptomyces rochei BTSS 1001 by Aparna Acharyabhatta, Siva Kumar Kandula, Ramana Terli

“…Using the polyphasic taxonomical approach and phenotypic characteristic studies, the isolate BTSS 1001 was characterized as marine actinomycete Streptomyces rochei.…”
Get full text

Generational Expression of Muir-Torre Syndrome in a Canadian Family by Kaitlin Alexandra Vanderbeck, R. Gary Sibbald, Nirosha Murugan

“…Muir-Torre syndrome (MTS) is a rare autosomal dominant inherited genodermatosis that is considered to be a phenotypic subtype of hereditary nonpolyposis colorectal cancer (HNPCC), commonly referred to as Lynch syndrome. …”
Get full text

Optimum Combination of Insulin-Transferrin-Selenium and Fetal Bovine Serum for Culture of Rabbit Articular Chondrocytes in Three-Dimensional Alginate Scaffolds by Lanlan Zhang, Hong Song, Xiaojun Zhao

“…For a total culture of 3 weeks, phenotypic gene expression in chondrocyte-seeded hydrogels was maintained at high levels in medium with 1% ITS plus 2% FBS, while it was decreased to varying degrees in the other groups. …”
Get full text

Identification and Characterization of Arcanobacterium canis from Companion Animals in Germany and The United Kingdom by Siti Gusti Ningrum, Antonia Kreitlow, Christoph Lämmler, Ellen Prenger-Berninghoff, Christa Ewers, Geoffrey Foster, Madeleine Plötz, Amir Abdulmawjood

“…The samples were characterized phenotypically and genotypically. Both isolates were analyzed using culture methods, biochemical analysis, MALDI-TOF MS, real-time PCR amplification and sequencing of the 16S rRNA gene, and rpoB, gap, and tuf genes. …”
Get full text

Morphological and Molecular study of Seven New Recorded of Ostracod in - Kurdistan Region, Iraq by Berivan A. Latef, Luay A. Ali

“…The goal of present study is the molecular study the species besides the phenotypic identification for more accurate taxonomic results. …”
Get full text

Systematic comparison of Mendelian randomisation studies and randomised controlled trials using electronic databases by Jie Zheng, George Davey Smith, Tom R Gaunt, Maria K Sobczyk

“…A manual survey of the literature highlighted the potential for triangulation across a number of exposure/outcome pairs if these challenges can be addressed.Conclusions We conclude that careful triangulation of MR with RCT evidence should involve consideration of similarity of phenotypes across study designs, intervention intensity and duration, study population demography and health status, comparator group, intervention goal and quality of evidence.…”
Get full text

Pathogenesis and Rehabilitation Therapy of Sleep Disorder after Stroke by HAN Xu, XIE Hongyu, TANG Xinwei, WU Yi

“…However, the pathogenesis of post-stroke sleep disorder is not yet fully clarified, and its basic research is still at the phenotypic determination stage. Issues such as treatment compliance, safety, and accuracy remain in rehabilitation treatment, and there is limited research on the rehabilitation of post-stroke EDS and RLS. …”
Get full text

Molecular Study of Acinetobacter baumannii Isolates for Metallo-β-Lactamases and Extended-Spectrum-β-Lactamases Genes in Intensive Care Unit, Mansoura University Hospital, Egypt by Nashwa M. Alkasaby, Maysaa El Sayed Zaki

“…A. baumannii was identified by colony morphology, API 20E, and confirmed by detecting the bla OXA-51-like carbapenemase gene by PCR. Phenotypic expression of MBLs resistance was demonstrated by Combined Disk Test (CDT) in 273 isolates (97.5%) and of ESBLs was demonstrated by double disc synergy method (DDST) in 6 isolates (2.1%). …”
Get full text

The genetic architecture of local adaptation in a cline by Laroche, Fabien, Lenormand, Thomas

“…It occurs whenever selection favors different phenotypes in different environments, provided that there is genetic variation for the corresponding traits and that the effect of selection is greater than the effect of drift and migration. …”
Get full text

The systemic evolutionary theory of the origin of cancer (SETOC): an update by Antonio Mazzocca, Giovanni Ferraro, Giovanni Misciagna

“…The decoupling of the two cellular subsystems causes transformed cells to acquire phenotypic characteristics analogous to those of unicellular organisms, as well as certain biological features of embryonic development that are normally suppressed. …”
Get full text

Tolerogenic Splenic IDO+ Dendritic Cells from the Mice Treated with Induced-Treg Cells Suppress Collagen-Induced Arthritis by Jie Yang, Yiming Yang, Huahua Fan, Hejian Zou

“…In this study, we found that after treatment with iTregs, splenic CD11c+DCs, termed “DCiTreg,” expressed tolerogenic phenotypes, secreted high levels of IL-10, TGF-β, and IDO, and showed potent immunosuppressive activity in vitro. …”
Get full text

Genus <i>Nicotiana</i> L.: a review of traits significant for ornamental crop production by E. G. Baranova, K. I. Ivanitsky, V. I. Suchkov

“…Thirty-seven accessions of Nicotiana spp. were studied in the greenhouses and at the experimental breeding site of VNIITTI using breeding methods and agricultural practices developed at the Institute and generally accepted in crop production.Results and conclusion. Phenotypic assessment of 37 Nicotiana accessions resulted in identifying for the first time 14 traits of ornamental value and selecting 18 original species and 10 hybrids of N. alata × N. × sanderae environmentally adapted to the local conditions and promising for landscaping and garden designing: with bright flowers, prolonged flowering, and relative resistance to stressful weather conditions. …”
Get full text

Comparative analysis of European bat lyssavirus 1 pathogenicity in the mouse model. by Elisa Eggerbauer, Florian Pfaff, Stefan Finke, Dirk Höper, Martin Beer, Thomas C Mettenleiter, Tobias Nolden, Jens-Peter Teifke, Thomas Müller, Conrad M Freuling

“…In order to assess whether different genetic features of EBLV-1 isolates correlate with phenotypic changes, different EBLV-1 variants were compared for pathogenicity in the mouse model. …”
Get full text