msiFlow: automated workflows for reproducible and scalable multimodal mass spectrometry imaging and microscopy data analysis by Philippa Spangenberg, Sebastian Bessler, Lars Widera, Jenny Bottek, Mathis Richter, Stephanie Thiebes, Devon Siemes, Sascha D. Krauß, Lukasz G. Migas, Siva Swapna Kasarla, Prasad Phapale, Jens Kleesiek, Dagmar Führer, Lars C. Moeller, Heike Heuer, Raf Van de Plas, Matthias Gunzer, Oliver Soehnlein, Jens Soltwisch, Olga Shevchuk, Klaus Dreisewerd, Daniel R. Engel

“…Here, we present msiFlow, an accessible open-source, platform-independent and vendor-neutral software for end-to-end, high-throughput, transparent and reproducible analysis of multimodal imaging data. msiFlow integrates all necessary steps from raw data import to analytical visualisation along with state-of-the-art and self-developed algorithms into automated workflows. …”
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Modelación numérica del concreto simple con elementos finitos mediante la teoría de la plasticidad y la función de fluencia de Hu y Schnobrich Numerical modeling of the simple conc... by Luis Rodríguez, Dorian Linero

“…The constitutive model presented in this paper was implemented in the nonlinear analysis finite element program with open source HYPLAS (de Souza Neto et al. 2008) and the post-process was performed using GiD (CIMNE 2008). …”
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Concept of a geoinformation platform for landmines and other explosive objects detection and mapping with UAV by Mykhailo Popov, Sergey Stankevich, Sergey Mosov, Stanislav Dugin, Stanislav Golubov, Artem Andreiev, Artur Lysenko, Ievgen Saprykin

“…At present, the concept is being developed in the form of a geoinformation platform research prototype involving an open-source Quantum GIS (QGIS) software system and Python programming language, which is used to create plug-ins for QGIS. …”
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Configurable Multi-Layer Perceptron-Based Soft Sensors on Embedded Field Programmable Gate Arrays: Targeting Diverse Deployment Goals in Fluid Flow Estimation by Tianheng Ling, Chao Qian, Theodor Mario Klann, Julian Hoever, Lukas Einhaus, Gregor Schiele

“…The workflow incorporates a custom-developed, open-source toolchain <i>ElasticAI.Creator</i> that facilitates quantization-aware training, integer-only inference, automated accelerator generation using VHDL templates, and synthesis alongside performance estimation. …”
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A deep multiple instance learning framework improves microsatellite instability detection from tumor next generation sequencing by John Ziegler, Jaclyn F. Hechtman, Satshil Rana, Ryan N. Ptashkin, Gowtham Jayakumaran, Sumit Middha, Shweta S. Chavan, Chad Vanderbilt, Deborah DeLair, Jacklyn Casanova, Jinru Shia, Nicole DeGroat, Ryma Benayed, Marc Ladanyi, Michael F. Berger, Thomas J. Fuchs, A. Rose Brannon, Ahmet Zehir

“…On a challenging yet representative set of cases, MiMSI showed higher sensitivity (0.895) and auROC (0.971) than MSISensor (sensitivity: 0.67; auROC: 0.907), an open-source software previously validated for clinical use at our institution using MSK-IMPACT large panel targeted NGS data. …”
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Marigold: a machine learning-based web app for zebrafish pose tracking by Gregory Teicher, R. Madison Riffe, Wayne Barnaby, Gabrielle Martin, Benjamin E. Clayton, Josef G. Trapani, Gerald B. Downes

“…Here, we introduce Marigold, a free and open source web app for high-throughput behavioral analysis of embryonic and larval zebrafish. …”
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Utilizing the Ethereum blockchain for retrieving and archiving augmented reality surgical navigation data by Sai Batchu, Michael J. Diaz, Lauren Ladehoff, Kevin Root, Brandon Lucke-Wold

“…Ethereum smart contracts present one such novel approach. Ethereum is an open-source platform that allows for the use of smart contracts. …”
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Rancang Bangun Sistem Informasi Afiliasi Penjualan Tiket Seminar berbasis Website menggunakan Framework Laravel by Dimas Kurnia Pratama, Adi Suryaputra Paramita

“…Sistem yang dibangun menggunakan Framework Laravel dimana Framework tersebut berbasis PHP yang open source dan memiliki konsep model-view-controller. …”
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Delays in health care seeking for diarrheal disease and associated factors among caregivers of under five children in health centers of northwest Ethiopia: a mixed-method study by Asnakech Marew, Zenebe Jebero Zaza, Shiferaw Birhanu, Amare Belachew, Tsehaynew Kasse

“…Qualitative data were collected from participants in waiting area after receiving treatments via in-depth interviews and analyzed using open-source software. The qualitative data were transcribed, translated, coded, thematized, and interpreted accordingly. …”
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Automatic Characterization of Prostate Suspect Lesions on T2-Weighted Image Acquisitions Using Texture Features and Machine-Learning Methods: A Pilot Study by Teodora Telecan, Cosmin Caraiani, Bianca Boca, Roxana Sipos-Lascu, Laura Diosan, Zoltan Balint, Raluca Maria Hendea, Iulia Andras, Nicolae Crisan, Monica Lupsor-Platon

“…Each nodule was manually segmented using the open-source 3D Slicer platform, and textural features were extracted using the PyRadiomics (version 3.0.1) library. …”
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Harmonizing population health data into OMOP common data model: a demonstration using COVID-19 sero-surveillance data from Nairobi Urban Health and Demographic Surveillance System by Michael Ochola, Sylvia Kiwuwa-Muyingo, Tathagata Bhattacharjee, David Amadi, Maureen Ng’etich, Damazo Kadengye, Henry Owoko, Boniface Igumba, Jay Greenfield, Jim Todd, Agnes Kiragga, Agnes Kiragga

“…The Observational Medical Outcome Partnership (OMOP) Common Data Model (CDM) is a standardized data model that can harmonize observational health data.ObjectiveThis paper demonstrates the use of the OMOP CDM to harmonize COVID-19 sero-surveillance data from the Nairobi Urban Health and Demographic Surveillance System (HDSS).MethodsIn this study, we extracted data from the Nairobi Urban HDSS COVID-19 sero-surveillance database and mapped it to the OMOP CDM. We used open-source Observational Health Data Sciences and Informatics (OHDSI) tools like WhiteRabbit, RabbitInAHat, and USAGI. …”
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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms by Barnabé, Christian, Sempéré, Guilhem, Manzanilla, Vincent, Millan, Joel Moo, Amblard-Rambert, Antoine, Waleckx, Etienne

“…This software is a versatile open-source tool for processing amplicon sequences, offering advantages such as high speed, efficient memory usage, and the ability to handle large datasets. …”
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Urban green infrastructure index: Assessing supply of regulating and cultural ecosystem services at a megacity scale by Yury Dvornikov, Valentina Grigorieva, Vyacheslav Vasenev, Mikhail Varentsov, Olga Romzaykina, Olga Maximova, Anastasia Konstantinova, Victor Matasov, Ekaterina Kozlova

“…In this study, we have used open-source geospatial data to quantify regulating (air pollution/noise and stormwater runoff regulation, climate mitigation), and cultural (aesthetic values, recreational activities, observation of flora and fauna) ES at three spatial levels within the Moscow megacity (municipal areas (districts), residential areas (quarters), and regular grid). …”
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Data-driven Dynamics with Orbital Torus Imaging: A Flexible Model of the Vertical Phase Space of the Galaxy by Adrian M. Price-Whelan, Jason A. S. Hunt, Danny Horta, Micah Oeur, David W. Hogg, Kathryn Johnston, Lawrence Widrow

“…We discuss the approximations and limitations of the OTI framework, which currently trades dynamical interpretability for flexibility in representing the data in some regimes, and which also presently separates the vertical and radial dynamics. We release an open-source tool, torusimaging , to accompany this article.…”
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Optical Coherence Tomography Angiography to Distinguish Changes of Choroidal Neovascularization after Anti-VEGF Therapy: Monthly Loading Dose versus Pro Re Nata Regimen by Alexandra Miere, Hassiba Oubraham, Francesca Amoroso, Pauline Butori, Polina Astroz, Oudy Semoun, Elsa Bruyere, Alexandre Pedinielli, Manar Addou-Regnard, Camille Jung, Salomon Y. Cohen, Eric H. Souied

“…CNV size was measured using a free image analysis software (ImageJ, open-source imaging processing software, 2.0.0). Results. …”
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Neonatal indicator data in Tanzania District Health Information System: evaluation of availability and quality of selected newborn indicators, 2015-2022 by Josephine Shabani, Nahya Salim, Christine Bohne, Louise Tina Day, Claud Kumalija, Ahmad Mohamed Makuwani, Felix Bundala, Habib Ismail, Joy E. Lawn, Eric O. Ohuma

“…The District Health Information System (DHIS2), an open-source platform in over 80 countries, supports health data collection and analysis, enabling progress tracking at national and subnational levels. …”
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Adulteration detection in cactus seed oil: Integrating analytical chemistry and machine learning approaches by Said El Harkaoui, Cristina Ortiz Cruz, Aaron Roggenland, Micha Schneider, Sascha Rohn, Stephan Drusch, Bertrand Matthäus

“…The proposed method, coded in Python and available as open-source, offers a flexible framework for continuous adaptation with new data.…”
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Application Of ArtifiCial Intelligence in E-Governance: A Comparative Study of Supervised Machine Learning and Ensemble Learning Algorithms on Crime Prediction. by Niyonzima, Ivan, Muhaise, Hussein, Akankwasa, Aureri

“…During this study, we used open-source crime data from the UCI Machine learning repository to train and validate our algorithms. …”
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Application of large language models in disease diagnosis and treatment by Xintian Yang, Tongxin Li, Qin Su, Yaling Liu, Chenxi Kang, Yong Lyu, Lina Zhao, Yongzhan Nie, Yanglin Pan, Yuanyuan Ji

“…Future directions include the integration of proprietary clinical knowledge, the investigation of open-source and customized models, and the evaluation of real-time effects in clinical diagnosis and treatment practices.…”
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VECTOR: Velocity-Enhanced GRU Neural Network for Real-Time 3D UAV Trajectory Prediction by Omer Nacar, Mohamed Abdelkader, Lahouari Ghouti, Kahled Gabr, Abdulrahman Al-Batati, Anis Koubaa

“…Overall, our findings confirm the effectiveness of incorporating velocity data in improving the accuracy of UAV trajectory predictions across both synthetic and real-world scenarios, in and out of position data distributions. Finally, we open-source our 5000 trajectories dataset and a ROS2 package to facilitate the integration with existing ROS-based UAV systems.…”
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