Systematic identification of secondary bile acid production genes in global microbiome by Yuwei Yang, Wenxing Gao, Ruixin Zhu, Liwen Tao, Wanning Chen, Xinyue Zhu, Mengping Shen, Tingjun Xu, Tingting Zhao, Xiaobai Zhang, Lixin Zhu, Na Jiao

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Editorial: Innovations in microbiome applications for health-promoting and sustainable food systems by Yiannis Kourkoutas, Nikolaos Kopsahelis, Antonios Koutelidakis, Andreas G. Tzakos

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Predicting climate-change impacts on the global glacier-fed stream microbiome by Massimo Bourquin, Hannes Peter, Grégoire Michoud, Susheel Bhanu Busi, Tyler J. Kohler, Andrew L. Robison, Mike Styllas, Leïla Ezzat, Aileen U. Geers, Matthias Huss, Stilianos Fodelianakis, The Vanishing Glaciers Field Team, Tom J. Battin

“…However, forecasts of how GFS microbiome structure and function will change under projected climate change scenarios are lacking. …”
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Altered microbiome and metabolome profiling in fearful companion dogs: An exploratory study. by Luigi Sacchettino, Michele Costanzo, Iolanda Veneruso, Valeria D'Argenio, Maria Mayer, Francesco Napolitano, Danila d'Angelo

“…Here, taking advantage of the next generation sequencing approach, we sought to investigate the potential connection between gut microbiota and microbiome in dogs suffering from generalized fear (n = 8), when compared to healthy subjects (n = 8), who all lived in different families. …”
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Role of Gut and Urinary Microbiome in Children with Urinary Tract Infections: A Systematic Review by Anjali Srivastava, Omprakash Shete, Annu Gulia, Sumit Aggarwal, Tarini Shankar Ghosh, Vineet Ahuja, Sachit Anand

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MiCML: a causal machine learning cloud platform for the analysis of treatment effects using microbiome profiles by Hyunwook Koh, Jihun Kim, Hyojung Jang

Subjects: “…Human microbiome…”
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Global meta‐analysis reveals the drivers of gut microbiome variation across vertebrates by Yong Xie, Songsong Xu, Yufei Xi, Zixin Li, Erwei Zuo, Kai Xing, Lijing Bai, Kui Li

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The urinary microbiome in association with diabetes and diabetic kidney disease: A systematic review. by Tiscar Graells, Yi-Ting Lin, Shafqat Ahmad, Tove Fall, Johan Ärnlöv

“…<h4>Background</h4>The urinary microbiome, or urobiome, is a novel area of research that has been gaining attention recently, as urine was thought to be sterile for years. …”
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The Effect of Mono- and Di-Saccharides on the Microbiome of Dairy Cow Manure and Its Odor by John H. Loughrin, Getahun E. Agga

“…Here, through 16S rRNA amplicon sequencing for microbiome analysis, we show that lactic acid bacterial growth was promoted by the addition of all three sugars. …”
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The bacterial microbiome modulates the initiation of brain metastasis by impacting the gut-to-brain axis by Matteo Massara, Michelle Ballabio, Bastien Dolfi, Golnaz Morad, Vladimir Wischnewski, Eleni Lamprou, Joao Lourenco, Stéphanie Claudinot, Hector Gallart-Ayala, Rui Santalla Méndez, Annamaria Kauzlaric, Nadine Fournier, Ashish V. Damania, Matthew C. Wong, Julijana Ivanisevic, Nadim J. Ajami, Jennifer A. Wargo, Johanna A. Joyce

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Beyond the microbiome: unraveling gut dysbiosis and its impact on systemic lupus erythematosus by Yara Safwat Roshdy, Shwikar Mahmoud Ahmed, Mona Gamaleldeen Morsi, Ahmed Shaaban, Samar Farouk Fouad Mostafa

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Effects of data transformation and model selection on feature importance in microbiome classification data by Zuzanna Karwowska, Oliver Aasmets, Estonian Biobank research team, Tomasz Kosciolek, Elin Org

“…Microbiome…”
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Early life gut microbiome and its impact on childhood health and chronic conditions by Harold Nunez, Pamela A. Nieto, Ruben A. Mars, Maryam Ghavami, Cheryl Sew Hoy, Kimberley Sukhum

Subjects: “…Infant microbiome…”
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The UK Crop Microbiome Cryobank: a utility and model for supporting Phytobiomes research by Matthew J. Ryan, Tim H. Mauchline, Jacob G. Malone, Susan Jones, Catriona M. A. Thompson, J. Miguel Bonnin, Helen Stewart, Payton T. O. Yau, Rodrigo G. Taketani, Ian M. Clark, Nicola Holden

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Enterococcus and Eggerthella species are enriched in the gut microbiomes of COVID-19 cases in Uganda by Carolina Agudelo, David Patrick Kateete, Emmanuel Nasinghe, Rogers Kamulegeya, Christopher Lubega, Monica Mbabazi, Noah Baker, Kathryn Y. Lin, Chang C. Liu, Arthur Shem Kasambula, Edgar Kigozi, Kevin Komakech, John Mukisa, Kassim Mulumba, Patricia Mwachan, Brenda Sharon Nakalanda, Gloria Patricia Nalubega, Julius Nsubuga, Diana Sitenda, Henry Ssenfuka, Giana T. Cirolia, Jeshua T. Gustafson, Ruohong Wang, Moses Luutu Nsubuga, Fahim Yiga, Sarah A. Stanley, Bernard Ssentalo Bagaya, Alison Elliott, Moses Joloba, Ashley R. Wolf

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Not all is lost: resilience of microbiome samples to freezer failures and long-term storage by M. Fabiola Pulido Barriga, James W. J. Randolph, Sydney I. Glassman

“…ABSTRACT Advances in technology have facilitated extensive sample collection to explore microbiomes across diverse systems, leading to a growing reliance on ultracold freezers for storing both samples and extracted DNA. …”
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Helicobacter pylori and the microbiome in gastric cancer development and treatment: A year in review by P. Vieira, M. Barbedo-Tavares, C. Figueiredo

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Protocol for identifying Mycobacterium tuberculosis infection status through airway microbiome profiling by Geoffrey Olweny, Moses Levi Ntayi, Edward Kyalo, Alex Kayongo

“…Summary: This protocol describes the steps to determine an airway microbiome signature for identifying Mycobacterium tuberculosis infection status. …”
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NTHi killing activity is reduced in COPD patients and is associated with a differential microbiome by Vancheswaran Gopalakrishnan, Ben Sparklin, Jung Hwan Kim, Jerome Bouquet, Margaret Kehl, Tara Kenny, Christopher Morehouse, Carolina Caceres, Paul Warrener, Ventzislava A. Hristova, Susan Wilson, Harini Shandilya, Arnita Barnes, Alexey Ruzin, Junmin Wang, Lisa Oberg, Bastian Angermann, Christopher McCrae, Adam Platt, Daniel Muthas, Sonja Hess, Christine Tkaczyk, Bret R. Sellman, Kristoffer Ostridge, Maria G. Belvisi, Tom M. A. Wilkinson, Karl J. Staples, Antonio DiGiandomenico, on behalf of the MICA II Study Group

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Deep learning in microbiome analysis: a comprehensive review of neural network models by Piotr Przymus, Krzysztof Rykaczewski, Adrián Martín-Segura, Jaak Truu, Enrique Carrillo De Santa Pau, Mikhail Kolev, Mikhail Kolev, Irina Naskinova, Aleksandra Gruca, Alexia Sampri, Alexia Sampri, Marcus Frohme, Alina Nechyporenko, Alina Nechyporenko

Subjects: “…microbiome…”
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