Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups by Maxwell Neal, William Brakewood, Michael Betenbaugh, Karsten Zengler

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Personal model‐assisted identification of NAD+ and glutathione metabolism as intervention target in NAFLD by Adil Mardinoglu, Elias Bjornson, Cheng Zhang, Martina Klevstig, Sanni Söderlund, Marcus Ståhlman, Martin Adiels, Antti Hakkarainen, Nina Lundbom, Murat Kilicarslan, Björn M Hallström, Jesper Lundbom, Bruno Vergès, Peter Hugh R Barrett, Gerald F Watts, Mireille J Serlie, Jens Nielsen, Mathias Uhlén, Ulf Smith, Hanns‐Ulrich Marschall, Marja‐Riitta Taskinen, Jan Boren

Subjects: “…personalized genome‐scale metabolic modeling…”
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A temperature-induced metabolic shift in the emerging human pathogen Photorhabdus asymbiotica by Elena Lucy Carter, Nicholas R. Waterfield, Chrystala Constantinidou, Mohammad Tauqeer Alam

Subjects: “…metabolic modeling…”
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Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study by M. A. Kulyashov, R. Hamilton, Y. Afshin, S. K. Kolmykov, T. S. Sokolova, T. M. Khlebodarova, M. G. Kalyuzhnaya, I. R. Akberdin

Subjects: “…context-specific genome-scale metabolic modeling…”
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Ion homeostasis in the regulation of intracellular pH and volume of human erythrocytes by О. І. Доценко, Г. В. Тарадіна

Subjects: “…mathematical metabolic modeling…”
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CFSA: Comparative flux sampling analysis as a guide for strain design by R.P. van Rosmalen, S. Moreno-Paz, Z.E. Duman-Özdamar, M. Suarez-Diez

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Improvement in the prediction power of an astrocyte genome-scale metabolic model using multi-omic data by Andrea Angarita-Rodríguez, Andrea Angarita-Rodríguez, Andrea Angarita-Rodríguez, Nicolás Mendoza-Mejía, Nicolás Mendoza-Mejía, Janneth González, Jason Papin, Jason Papin, Jason Papin, Andrés Felipe Aristizábal, Andrés Pinzón

Subjects: “…genome-scale metabolic models…”
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Auxotrophy-based curation improves the consensus genome-scale metabolic model of yeast by Siyu Han, Ke Wu, Yonghong Wang, Feiran Li, Yu Chen

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Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer’s disease by Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A. Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D. Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B. Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E. Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, Wenzel Glanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H. Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F. Kaddurah-Daouk, Barbara B. Bendlin, Johannes Hertel, Ines Thiele

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Research Progress on Genome-Scale Metabolic Models of Lactic Acid Bacteria and Their Application in the Food System by LIU Zihao, NI Haojie, LI Wenlu, WANG Fengzhong, WANG Yanbo, ZENG Hong

Subjects: “…lactic acid bacteria; genome-scale metabolic model; metabolic simulation; food industry…”
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In silico identification of switching nodes in metabolic networks by Mairet, Francis

Subjects: “…Genome-scale metabolic model, Branching point, Reporter metabolites, Flux Balance Analysis…”
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Genome streamlining of Pseudomonas putida B6-2 for bioremediation by Siqing Fan, Hao Ren, Xueni Fu, Xiangyu Kong, Hao Wu, Zhenmei Lu

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CLAIRE: a contrastive learning-based predictor for EC number of chemical reactions by Zishuo Zeng, Jin Guo, Jiao Jin, Xiaozhou Luo

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Identifying Hub Genes and Metabolic Pathways in Collagen VI-Related Dystrophies: A Roadmap to Therapeutic Intervention by Atakan Burak Ceyhan, Ali Kaynar, Ozlem Altay, Cheng Zhang, Sehime Gulsun Temel, Hasan Turkez, Adil Mardinoglu

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Longitudinal Metabolomics Data Analysis Informed by Mechanistic Models by Lu Li, Huub Hoefsloot, Barbara M. Bakker, David Horner, Morten A. Rasmussen, Age K. Smilde, Evrim Acar

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Strategy for Optimizing Vitamin B12 Production in <i>Pseudomonas putida</i> KT2440 Using Metabolic Modeling by Thomaz Satuye Prieto-de Lima, Keilor Rojas-Jimenez, Christopher Vaglio

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