Ion channel classification through machine learning and protein language model embeddings by Ghazikhani Hamed, Butler Gregory

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Structure of an ex vivoDrosophila TOM complex determined by single-particle cryoEM by Agalya Periasamy, Pamela Ornelas, Thomas Bausewein, Naomi Mitchell, Jiamin Zhao, Leonie M. Quinn, Werner Kuehlbrandt, Jacqueline M. Gulbis

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Specific Immune Responses and Oncolytic Effects Induced by EBV LMP2A-Armed Modified Ankara-Vaccinia Virus Vectored Vaccines in Nasopharyngeal Cancer by Liying Sun, Chao Liu, Junping Peng

Subjects: “…Epstein-Barr virus latent membrane protein 2A…”
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A guide to selecting high-performing antibodies for VAPB (UniProt ID: O95292) for use in western blot, immunoprecipitation, and immunofluorescence [version 1; peer review: 3 approv... by Maryam Fothouhi, Peter S. McPherson, Carl Laflamme, Sara González Bolívar, Riham Ayoubi, Charles Alende, Irina Shlaifer

Subjects: “…Vesicle-associated membrane protein-associated protein B/C…”
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Escherichia coli O127 group 4 capsule proteins assemble at the outer membrane. by Matthew R Larson, Kassia Biddle, Adam Gorman, Sarah Boutom, Ilan Rosenshine, Mark A Saper

“…We have developed an expression system for the large-scale production of the outer membrane protein GfcD. Contrary to annotations, we find that GfcD is a non-acylated integral membrane protein. …”
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Machine learning models for predicting interaction affinity energy between human serum proteins and hemodialysis membrane materials by Simin Nazari, Amira Abdelrasoul

“…Affinity energy, defined as the strength of interaction between membranes and human serum proteins, plays a crucial role in assessing membrane-protein interactions. These interactions may trigger adverse reactions, potentially harmful to patients. …”
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Fragment optimized chalcone derivatives targeting OmpA protein as a therapeutic approach against multidrug resistant Acinetobacter baumannii by Muhammad Naveed, Amina Abid, Tariq Aziz, Ayesha Saleem, Arooj Arshad, Khushbakht Javed, Hafiz Muzzammel Rehman, Ghulam Nabi, Mitub Al-harbi, Abdullah F. Alasmari

“…Abstract Acinetobacter baumannii is a notorious pathogen associated with life-threatening infections, with its outer membrane protein A (OmpA) being a key contributor to its pathogenicity by targeting epithelial cell apoptosis. …”
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Development of an sRNA-mediated conditional knockdown system for Chlamydia trachomatis by Janina Ehses, Kevin Wang, Asha Densi, Cuper Ramirez, Ming Tan, Christine Sütterlin

“…To test for polar effects, we separately targeted the inclusion membrane proteins IncE and IncG, which are expressed from the incDEFG operon. …”
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UPR-Mediated Membrane Biogenesis in B Cells by Joseph W. Brewer, Suzanne Jackowski

“…In activated B cells, the demand for membrane protein and lipid components leads to activation of the UPR transcriptional activator XBP1(S) which, in turn, initiates a cascade of biochemical events that enhance supplies of phospholipid precursors and build machinery for the synthesis, maturation, and transport of secretory proteins. …”
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Diffusion-driven self-assembly of emerin nanodomains at the nuclear envelope by Carlos D. Alas, Liying Wu, Fabien Pinaud, Christoph A. Haselwandter

“…Emerin, a nuclear membrane protein with important biological roles in mechanotransduction and nuclear shape adaptation, self-assembles into nanometer-size domains at the inner nuclear membrane. …”
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Tissue Factor Structure and Function by Saulius Butenas

“…Tissue factor (TF) is an integral membrane protein that is essential to life. It is a component of the factor VIIa-TF complex enzyme and plays a primary role in both normal hemostasis and thrombosis. …”
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Updated review on diagnosis of Helicobacter pylori by R. Ugiagbe, S. Smith

“…The main themes include invasive and noninvasive diagnostic methods of H. pylori, newer methods, such as a panel of ten H. pylori specific antibodies test, testing for H. pylori using gastric fluid and outer membrane protein-cell receptor reactions diagnostic methods, and serological and pepsinogen tests. …”
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Adaptive Genetic Traits in Human Populations: Evolutionary Responses to Malaria by Arun Ghosh, Aparna Ajith S, Abhijith Pradeep

“…Notable adaptations include hemoglobinopathies (sickle cell trait, thalassemias, hemoglobin C), enzyme disorders (G6PD deficiency, pyruvate kinase deficiency), and membrane protein variations (Duffy antigen negativity, hereditary ovalocytosis). …”
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Recycling of endocytic BDNF through extracellular vesicles in astrocytes by Jeongho Han, Hyungju Park

“…Downregulation of vesicle-associated membrane protein 3 (Vamp3) led to an increase in the colocalization of endosomal BDNF and CD63 but a decrease in extracellular vesicle release, suggesting the necessity of Vamp3-dependent signaling for EV-mediated BDNF secretion. …”
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Protein-Mediated Interactions of Pancreatic Islet Cells by Paolo Meda

“…Among these, several mechanisms depend on different families of integral membrane proteins, which ensure direct (cadherins, N-CAM, occludin, and claudins) and paracrine communications (pannexins) between beta cells, and between these cells and the other islet cell types. …”
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Drug Resistance Mechanism of Enterobacteriaceae with Decreased Antibiotic Sensitivity by Fang Rong, Yuanyuan Sun, Xiao Li, Chenhao Zhang

“…Plasmid-mediated deletion of IMP-1 metallo-β-lactamase binding outer membrane protein is one of the main reasons for the decrease of antibiotic sensitivity.…”
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Soluble Urokinase Receptor and the Kidney Response in Diabetes Mellitus by Ranadheer R. Dande, Vasil Peev, Mehmet M. Altintas, Jochen Reiser

“…Recently, podocyte membrane protein urokinase receptor (uPAR) and its circulating form (suPAR) are found to be significantly induced in glomeruli and sera of DN patients, respectively, and elevated suPAR levels predicted diabetic kidney disease years before the occurrence of microalbuminuria. …”
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Irisin a Novel Metabolic Biomarker: Present Knowledge and Future Directions by Ilse Yessabel Martinez Munoz, Eneida del Socorro Camarillo Romero, Jose de Jesus Garduno Garcia

“…It is the product of type I membrane protein cleavage encoded by the fibronectin type III domain containing 5 (FNDC5) gene. …”
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Mining the Virgin Land of Neurotoxicology: A Novel Paradigm of Neurotoxic Peptides Action on Glycosylated Voltage-Gated Sodium Channels by Zhirui Liu, Jie Tao, Pin Ye, Yonghua Ji

“…Voltage-gated sodium channels (VGSCs) are important membrane protein carrying on the molecular basis for action potentials (AP) in neuronal firings. …”
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The Effect of Highly Hydroxylated Fullerenol C60(OH)36 on Human Erythrocyte Membrane Organization by Jacek Grebowski, Anita Krokosz

“…This confirms that fullerenol interacts with erythrocyte membrane proteins via available protein –SH groups.…”
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