Genomic typing, antimicrobial resistance gene, virulence factor and plasmid replicon database for the important pathogenic bacteria Klebsiella pneumoniae by Andrey Shelenkov, Anna Slavokhotova, Yulia Mikhaylova, Vasiliy Akimkin

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Sample Tracking Tool: A Comprehensive Approach Based on OpenArray Technology and R Scripting for Genomic Sample Monitoring by Giulia Trastulli, Giulia Calvino, Bruno Papasergi, Domenica Megalizzi, Cristina Peconi, Stefania Zampatti, Claudia Strafella, Carlo Caltagirone, Emiliano Giardina, Raffaella Cascella

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Communication invitée du thème "L’Asie, zone de carrefours"Insights into human history from ancient genomes by Janet Kelso

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Metabolic Blockade-Based Genome Mining of <i>Malbranchea circinata</i> SDU050: Discovery of Diverse Secondary Metabolites by Hu Yang, Xiaowei Luo, Zhuo Shang, Kunlong Li, Jian Cai, Yingying Chen, Longchao Xin, Jianhua Ju

“…<i>Malbranchea circinata</i> SDU050, a fungus derived from deep-sea sediment, is a prolific producer of diverse secondary metabolites. Genome sequencing revealed the presence of at least 69 biosynthetic gene clusters (BGCs), including 30 encoding type I polyketide synthases (PKSs). …”
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Genome-wide characterization and expression analysis of the ADF gene family in response to salt and drought stress in alfalfa (Medicago sativa) by Mengmeng Shi, Yike Wang, Peng Lv, Yujie Gong, Qi Sha, Xinyan Zhao, Wen Zhou, Lingtao Meng, Zegang Han, Lingxiao Zhang, Lingxiao Zhang, Yongwang Sun, Yongwang Sun

“…In this study, a total of nine ADF genes (designated MsADF1 through MsADF9) were identified in the alfalfa genome and mapped to five different chromosomes. A phylogenetic analysis indicated that the MsADF genes could be classified into four distinct groups, with members within the same group exhibiting comparable gene structures and conserved motifs. …”
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Alleviative effects of Bacillus coagulans strains on irritable bowel syndrome-unraveling strain specificity through physiological and genomic analysis by Jiang Cao, Leilei Yu, Jianxin Zhao, Hao Zhang, Wei Chen, Yuzheng Xue, Qixiao Zhai

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Genome-wide identification, characterization and expression pattern analysis of HAK/KUP/KT potassium transporter gene family in potato by Kun Liu, Yonglin Qin, Lan Wu, Rong Yi, Xiaohua Shi, Jing Yu, Xiaohong Shi, Wenzhuo Dong, Liguo Jia, Mingshou Fan

“…In this study, 24 HAK/KUP/KT genes (StHAKs) were identified through a genome-wide analysis and were found to be unevenly distributed across ten chromosomes. …”
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The complete mitochondrial genomes and phylogenetic analysis of two Chinese endemic cave fishes, Sinocyclocheilus guilinensis and S. huangtianensis (Cypriniformes: Cyprinidae) by Guojin Yao, You He, Chenhong Li

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iDICss robustly predicts melanoma immunotherapy response by synergizing genomic and transcriptomic knowledge via independent component analysis by Jiayue Qiu, Nana Jin, Lixin Cheng, Chen Huang

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Genome Mining and Characterization of Two Novel <i>Lacticaseibacillus rhamnosus</i> Probiotic Candidates with Bile Salt Hydrolase Activity by Gianluigi Agolino, Marianna Cristofolini, Amanda Vaccalluzzo, Davide Tagliazucchi, Alice Cattivelli, Alessandra Pino, Cinzia Caggia, Lisa Solieri, Cinzia Lucia Randazzo

“…The draft genomes of <i>Lcb. rhamnosus</i> VB4 and VB1 strains comprised 2769 and 2704 CDSs, respectively. …”
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The genome sequence of Radford’s Flame Shoulder, Ochropleura leucogaster (Freyer, 1831) [version 1; peer review: 2 approved] by Mark J. Sterling, David C. Lees

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South African indigenous chickens' genetic diversity, and the adoption of ecological niche modelling and landscape genomics as strategic conservation techniques by Reneilwe Rose Mogano, Takalani Judas Mpofu, Bohani Mtileni, Khanyisile Hadebe

“…The main insights of the study are that indigenous chickens are highly diversified, and environmental factors play a key role in enabling chicken adaptation and distribution. Genomic and spatial technologies have made it possible to explore the genetic structure and fully comprehend the mechanism underlying the local adaptation of indigenous chickens. …”
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A Consecutive Genome Engineering Method Reveals a New Phenotype and Regulation of Glucose and Glycerol Utilization in Clostridium Pasteurianum by Tom Nguyen, Luca W. G. Meleski, Minu P. Belavatta, Sivasubramanian Gurumoorthi, Chijian Zhang, Anna‐Lena Heins, An‐Ping Zeng

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Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status by S. Nooij, N. Plomp, I. M. J. G. Sanders, L. Schout, A. E. van der Meulen, E. M. Terveer, J. M. Norman, N. Karcher, M. F. Larralde, R. H. A. M. Vossen, S. L. Kloet, K. N. Faber, H. J. M. Harmsen, G. F. Zeller, E. J. Kuijper, W. K. Smits, Q. R. Ducarmon

“…Analysis of these genomes and publicly available high-quality draft genomes (N = 333 genomes) revealed multiple clades which separated Crohn’s-derived isolates from healthy-derived isolates. …”
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Successful establishment of CRISPR-based genome-edited clonal cell populations from primary cells of buffalo, goats, and sheep by Priyanka Singh, Bosco Jose, Devika Gautam, Aseem Tara, Shreya Malhotra, Sacchinandan De, Manoj K. Singh, Naresh L. Selokar

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Diversity and antimicrobial resistance profiles of Mycobacterium avium complex clinical isolates in Thailand based on whole genome comparative analysis by Vorthon Sawaswong, Kanphai Wongjarit, Suthidee Petsong, Yonita Yuliani, Ubonwan Somsukpiroh, Kiatichai Faksri, Taya Forde, Sunchai Payungporn, Suwatchareeporn Rotcheewaphan

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Spatiotemporal and genomic analysis of carbapenem resistance elements in Enterobacterales from hospital inpatients and natural water ecosystems of an Irish city by Mark Maguire, Carlos Serna, Natalia Montero Serra, Aneta Kovarova, Louise O’Connor, Niamh Cahill, Brigid Hooban, Niall DeLappe, Wendy Brennan, Genevieve Devane, Martin Cormican, Dearbháile Morris, Simone C. Coughlan, Georgios Miliotis, Bruno Gonzalez-Zorn, Liam P. Burke

“…We employed hybrid assembly approaches for improved resolution of CPE genomic surveillance, typing, and plasmid characterization. …”
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High quality genome assembly and annotation (v1) of the eukaryotic terrestrial microalga Coccomyxa viridis SAG 216-4 by Kraege, Anton, Chavarro-Carrero, Edgar A., Guiglielmoni, Nadège, Schnell, Eva, Kirangwa, Joseph, Heilmann-Heimbach, Stefanie, Becker, Kerstin, Köhrer, Karl, Schiffer, Philipp, Thomma, Bart P. H. J., Rovenich, Hanna

“…We generated a high-quality genome assembly for the lichen photobiont Coccomyxa viridis SAG 216-4 (formerly C. mucigena). …”
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COMPUTATIONAL ANALYSIS AND FUNCTIONAL ANNOTATION OF AP2/ERF TRANSCRIPTION FACTOR BINDING SITES IN ARABIDOPSIS THALIANA L. GENOME by O. A. Chernykh, V. G. Levitsky, N. A. Omelyanchuk, V. V. Mironova

“…We carried out GCC box recognition and tested its distribution in the Arabidopsis thaliana L. genome. Functional annotation and microarray data analysis of the genes possessing predicted GCC-boxes elucidated their role in ethylene response.…”
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Candidate genes for productivity identified by genome-wide association study with indicators of class in the Russian meat merino sheep breed by A. Y. Krivoruchko, O. A. Yatsyk, E. Y. Safaryan

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