Genome analysis of colistin-resistant Salmonella isolates from human sources in Guizhou of southwestern China, 2019–2023 by Jingtong Wu, Yongxian Wen, Lv You, Xiaoyu Wei, Xiaoyu Wei, Junhua Wang, Ge Zhu, Shijun Li

Subjects: “…whole-genome sequence…”
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Complete Whole-Genome Sequence of Streptomyces sp. MUM 178J, a Potential Anti-Vibrio Agent by Ke-Yan Loo, Loh Teng-Hern Tan, Kah-Ooi Chua, Priyia Pusparajah, Kok-Gan Chan, Learn-Han Lee, Jodi Woan-Fei Law, Vengadesh Letchumanan

“…Therefore, the strain was subjected to whole genome sequencing to unearth its genomic potential. …”
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Evaluating the potential of assembler-binner combinations in recovering low-abundance and strain-resolved genomes from human metagenomes by Hajra Qayyum, Muhammad Sarfraz Talib, Amjad Ali, Masood Ur Rehman Kayani

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A genomic duplication spanning multiple P450s contributes to insecticide resistance in the dengue mosquito Aedes aegypti by Bacot, Tiphaine, Haberkorn, Chloe, Guilliet, Joseph, Cattel, Julien, Kefi, Mary, Nadalin, Louis, Filee, Jonathan, Boyer, Frederic, Gaude, Thierry, Laporte, Frederic, Tutagata, Jordan, Vontas, John, Dusfour, Isabelle, Bonneville, Jean-Marc, David, Jean-Philippe

“…Combining RNA-seq and whole genome pool-seq identified a 220 Kb genomic duplication enhancing the expression of multiple contiguous cytochrome P450s in the resistant line. …”
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Characterizing mutation-treatment effects using clinico-genomics data of 78,287 patients with 20 types of cancers by Ruishan Liu, Shemra Rizzo, Lisa Wang, Nayan Chaudhary, Sophia Maund, Marius Rene Garmhausen, Sarah McGough, Ryan Copping, James Zou

“…We systematically identified 776 genomic alterations associated with survival outcomes across 20 distinct cancer types treated with specific immunotherapies, chemotherapies, or targeted therapies. …”
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Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance by Riccardo Spott, Mathias W Pletz, Carolin Fleischmann-Struzek, Aurelia Kimmig, Christiane Hadlich, Matthias Hauert, Mara Lohde, Mateusz Jundzill, Mike Marquet, Petra Dickmann, Ruben Schüchner, Martin Hölzer, Denise Kühnert, Christian Brandt

“…Given the rapid cross-country spread of SARS-CoV-2 and the resulting difficulty in tracking lineage spread, we investigated the potential of combining mobile service data and fine-granular metadata (such as postal codes and genomic data) to advance integrated genomic surveillance of the pandemic in the federal state of Thuringia, Germany. …”
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Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism. by Qiao Fan, Xin Zhou, Chiea-Chuen Khor, Ching-Yu Cheng, Liang-Kee Goh, Xueling Sim, Wan-Ting Tay, Yi-Ju Li, Rick Twee-Hee Ong, Chen Suo, Belinda Cornes, Mohammad Kamran Ikram, Kee-Seng Chia, Mark Seielstad, Jianjun Liu, Eranga Vithana, Terri L Young, E-Shyong Tai, Tien-Yin Wong, Tin Aung, Yik-Ying Teo, Seang-Mei Saw

“…Here we report the results from five genome-wide association studies of corneal astigmatism across three Asian populations, with an initial discovery set of 4,254 Chinese and Malay individuals consisting of 2,249 cases and 2,005 controls. …”
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A Comparative Genomic Study in Schizophrenic and in Bipolar Disorder Patients, Based on Microarray Expression Profiling Meta-Analysis by Marianthi Logotheti, Olga Papadodima, Nikolaos Venizelos, Aristotelis Chatziioannou, Fragiskos Kolisis

“…In particular we have focused on genes and mechanisms involved in amino acid transport through cell membranes from whole genome expression profiling data. We performed bioinformatic analysis on raw data derived from four different published studies. …”
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Intraspecific epigenomics divergence in brown bears (Ursus arctos): insights from genome-wide DNA methylation patterns by Paolo Colangelo, Paolo Colangelo, Ian Marc Bonapace, Laura Gramolini, Emanuela Solano, Emanuela Solano, Elisa Desiato, Paolo Franchini, Leonardo Gentile, Roberto Guadagnini, Oddmund Kleven, Jonas Kindberg, Jonas Kindberg, Alexander Kopatz, Paolo Ciucci

“…Differentially methylated sites, possibly associated with genomic features involved in development and anatomical differentiation, are widespread across the bear genome. …”
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Genome-Wide Association and Transcriptome-Wide Association Studies Identify Novel Susceptibility Genes Contributing to Colorectal Cancer by Ruimin Yin, Binbin Song, Jingjing Wang, Chaodan Shao, Yufen Xu, HongGang Jiang

“…In the post-GWAS analyses, we first identified new genome-wide significant associations: three genomic risk loci were identified at 8q24.21 (rs6983267, P=6.98×10−12), 15q13.3 (rs58658771, P=1.40×10−10), and 18q21.1 (rs6507874, P=1.91×10−14). …”
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The genome sequence of Cory’s shearwater, Calonectris borealis (Cory, 1881) [version 1; peer review: 2 approved] by Joan Ferrer Obiol, Guillem Izquierdo Arànega, Marta Riutort León, Raül Ramos Garcia, Jacob González-Solís Bou, Julio Rozas Liras

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The genome sequence of a leafhopper, Allygus modestus Scott, 1876 [version 1; peer review: 2 approved] by Keith Fowler

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Improvement of the knock-in effciency in the genome of human induced pluripotent stem cells using the CRISPR/Cas9 system by М. М. Gridina

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Genome-wide association scan and candidate gene analysis for seed coat color in sesame (Sesamum indicum L.) by Mohammed Elsafy, Wafa Badawi, Ahmed Ibrahim, Elamin Hafiz Baillo, Prabin Bajgain, Tilal Sayed Abdelhalim, Mahbubjon Rahmatov

“…GWAS identified significant SNPs associated with seed coat color traits, revealing key genomic regions on chromosomes 3, 6, 9, 12, and 13. …”
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The Comparative Analyses of Six Complete Chloroplast Genomes of Morphologically Diverse Chenopodium album L. (Amaranthaceae) Collected in Korea by Jongsun Park, Juhyeon Min, Yongsung Kim, Youngjae Chung

“…International Journal of Genomics…”
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An insight into the genome-wide analysis of bacterial defense mechanisms in a uropathogenic Morganella morganii isolate from Bangladesh. by Syed Muktadir Al Sium, Barna Goswami, Sanjana Fatema Chowdhury, Showti Raheel Naser, Mihir Kanti Sarkar, Md Jobaid Faruq, Md Ahashan Habib, Shahina Akter, Tanjina Akhtar Banu, Md Murshed Hasan Sarkar, Md Salim Khan

“…A clinical isolate from a UTI patient in Bangladesh was subjected to high-throughput whole genome sequencing and extensive bioinformatics analysis in order to gather knowledge about the genomic basis of bacterial defenses and pathogenicity in M. morganii. …”
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Personalized prediction of anticancer potential of non-oncology drugs through learning from genome derived molecular pathways by Xiaobao Dong, Huanhuan Liu, Ting Tong, Liuxing Wu, Jianhua Wang, Tianyi You, Yongjian Wei, Xianfu Yi, Hongxi Yang, Jie Hu, Haitao Wang, Xiaoyan Wang, Mulin Jun Li

“…Abstract Advances in cancer genomics have significantly expanded our understanding of cancer biology. …”
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Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat by Hai D. T. Nguyen, Tahera Sultana, Prasad Kesanakurti, Sarah Hambleton

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Decoding the anomalies: a genome-based analysis of Bacillus cereus group strains closely related to Bacillus anthracis by Thuto Gomolemo Magome, Marius Surleac, Marius Surleac, Ayesha Hassim, Cornelius Carlos Bezuidenhout, Henriette van Heerden, Kgaugelo Edward Lekota

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Integrative evidence reveals a new species of Hysterothylacium (Nematoda: Ascaridoidea), with the characterization of its complete mitochondrial genome by Hui-Xia Chen, Hai-Xia Qiao, Wen-Ting Zhao, Xiao-Hong Gu, Liang Li

“…The complete mitochondrial genome of the new species was sequenced and annotated, which represents the first mitogenomic data for the genus Hysterothylacium, and also for the family Raphidascarididae. …”
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