Genomic and algorithm-based predictive risk assessment models for benzene exposure by Minyun Jiang, Minyun Jiang, Na Cai, Na Cai, Juan Hu, Lei Han, Lei Han, Fanwei Xu, Baoli Zhu, Baoli Zhu, Baoli Zhu, Baoli Zhu, Boshen Wang

“…AimIn this research, we leveraged bioinformatics and machine learning to pinpoint key risk genes associated with occupational benzene exposure and to construct genomic and algorithm-based predictive risk assessment models.Subject and methodsWe sourced GSE9569 and GSE21862 microarray data from the Gene Expression Omnibus. …”
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Successful Diagnosis of Sengers Syndrome Using a Comprehensive Genomic Analysis by Kohta Nakamura, Yukiko Yatsuka, Sachie Naito, Akira Hasegawa, Takeya Kasukawa, Atsushi Kondo, Yoshihito Kishita, Yohei Sugiyama, Takanori Onuki, Tomohiro Ebihara, Tomoko Tsuruoka, Takuya Fushimi, Akira Ohtake, Kei Murayama, Atsuko Imai‐Okazaki, Yasushi Okazaki

“…Molecular Genetics & Genomic Medicine…”
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Immunotherapy in ovarian cancer: spatial functional genomics to unravel resistance mechanisms by Martina Rausch, Karlotta Bartels, Josef Leibold

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Chromosome-level reference genome assembly for the mountain hare (Lepus timidus) by Fekete, Zsófia, Absolon, Dominic E., Michell, Craig, Wood, Jonathan M. D., Goffart, Steffi, Pohjoismäki, Jaakko L. O.

Subjects: “…Lagomorpha, reference genome, chromosome structure, phylogeny, fibroblast cell line…”
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Using genomics to explore the epidemiology of vancomycin resistance in a sewage system by Emilie Egholm Bruun Jensen, Saria Otani, Ivan Liachko, Benjamin Auch, Frank M. Aarestrup

“…The other end of these reads was mapped to generated metagenomic-assembled genomes and NCBI using BLAST. vanHBX could only be linked to the phylum level (Bacillota). …”
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Multiple Group Testing Procedures for Analysis of High-Dimensional Genomic Data by Hyoseok Ko, Kipoong Kim, Hokeun Sun

“…Genomics & Informatics…”
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Comparative assessment of the copy number of satellite repeats in the genome of Triticeae species by P. Yu. Kroupin, A. I. Yurkina, A. A. Kocheshkova, D. S. Ulyanov, G. I. Karlov, M. G. Divashuk

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Pan-genome analysis and expression verification of the maize ARF gene family by Quan-cai Man, Yan-qun Wang, Shun-juan Gao, Zhi-chang Gao, Zheng-ping Peng, Jiang-hui Cui

Subjects: “…maize pan-genome…”
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Genomic Imprinting and Cancer: From Primordial Germ Cells to Somatic Cells by Adele Murrell

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Study of Modern Human Evolution via Comparative Analysis with the Neanderthal Genome by Musaddeque Ahmed, Ping Liang

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A Genomic Approach to Study Anthocyanin Synthesis and Flower Pigmentation in Passionflowers by Lilian Cristina Baldon Aizza, Marcelo Carnier Dornelas

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Widespread mutagenesis and chromosomal instability shape somatic genomes in systemic sclerosis by Sriram Vijayraghavan, Thomas Blouin, James McCollum, Latarsha Porcher, François Virard, Jiri Zavadil, Carol Feghali-Bostwick, Natalie Saini

“…We find an overall increase in all major mutation types in systemic sclerosis samples compared to control lung samples, from small-scale events such as single base substitutions and insertions/deletions, to chromosome-level changes, including copy-number changes and structural variants. In the genomes of patients with systemic sclerosis, we find evidence of somatic hypermutation or kategis (typically only seen in cancer genomes), we identify mutation signatures closely resembling the error-prone translesion polymerase Polη activity, and observe an activation-induced deaminase-like mutation signature, which overlaps with genomic regions displaying kataegis.…”
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Genome-based analysis of the genetic pattern of black sheep in Qira sheep by Wen Zhou, Xiaopeng Li, Xuechen Zhang, Lijun Zhu, Yuwei Peng, Cheng-long Zhang, Zhipeng Han, Ruizhi Yang, Xinyu Bai, Quanfeng Wang, Yuejun Zhao, Shudong Liu

“…BMC Genomics…”
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Comparative genomics reveal a novel phylotaxonomic order in the genus Fusobacterium by Cristian Molteni, Diego Forni, Rachele Cagliani, Manuela Sironi

“…We report recent and ancestral recombination in core genes, indicating that fusobacteria have mosaic genomes and emphasizing that taxonomic demarcation should not rely on single genes/gene regions. …”
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Near-chromosome level genome assembly of devil firefish, Pterois miles by Kitsoulis, Christos V., Papadogiannis, Vasileios, Kristoffersen, Jon B., Kaitetzidou, Elisavet, Sterioti, Aspasia, Tsigenopoulos, Costas S., Manousaki, Tereza

“…Even though lionfishes (Scorpaenidae) are identified among the most prosperous marine invaders, within this taxonomic group, the genomic resources are scant, while reference genome assemblies are totally absent. …”
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Methodology for identifying the socio-economic genome on the commodity market for sugar production by D. Yu. Zhmurko

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Making complex things simpler: modern tools to edit the plant genome by N. E. Zlobin, V. V. Ternovoy, N. A. Grebenkina, V. V. Taranov

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Genomic variation responding to artificial selection on different lines of Pekin duck by Xinye Zhang, Fangxi Yang, Jinxin Zhang, Tao Zhu, Xiurong Zhao, Yuchen Liu, Junhui Wen, Hongchang Gu, Gang Wang, Xufang Ren, Anqi Chen, Lujiang Qu

“…Understanding the genomic variation in Pekin duck under artificial selection is important for improving the utilization of duck genetic resources. …”
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Genome Sequencing Reveals the Adaptation of Chickens to High Altitudes in Different Regions by Yizhou Hu, Xing Li, Qixin Guo, Lan Huang, Hao Bai, Guobin Chang

Subjects: “…genome sequencing…”
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Chromosome-level genome sequencing and assembly of the parasitoid wasp Leptopilina myrica by Zhi Dong, Zixuan Xu, Junwei Zhang, Yulong Guo, Qichao Zhang, Lan Pang, Ting Feng, Wenqi Shi, Yifeng Sheng, Jianhua Huang, Jiani Chen

“…Despite their ecological significance, the genomic basis of host selection and parasitism in this genus remains underexplored. …”
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