3C-BASED METHODS FOR 3D GENOME ORGANIZATION ANALYSIS by N. R. Battulin, V. S. Fishman, Yu. L. Orlov, A. G. Menzorov, D. A. Afonnikov, O. L. Serov

Subjects: “…3d genome organization…”
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The complete mitochondrial genome of Ophiocordyceps gracilis and its comparison with related species by Aifeire Abuduaini, Yuan-Bing Wang, Hui-Ying Zhou, Rui-Ping Kang, Ming-Liang Ding, Yu Jiang, Fei-Ya Suo, Luo-Dong Huang

Subjects: “…Mitochondrial genome…”
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Utilizing genomic profiling in decoding oral cancer-prognosis and precision treatment by S. Pavithra, A. Saravanan, A.S. Vickram

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A phenomenological model of non-genomic variability of luminescent bacterial cells by S. I. Bartsev

Subjects: “…non-genomic variability…”
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A chromosome-level genome assembly of wild silkmoth, Bombyx mandarina by Jung Lee, Takashi Kiuchi, Katsushi Yamaguchi, Shuji Shigenobu, Atsushi Toyoda, Toru Shimada

“…ATAC-seq data comprehensively detected open chromosome regions, which will benefit when CRISPR/Cas9-mediated genome editing is conducted.…”
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Development and Validation of a Bordetella pertussis Whole-Genome Screening Strategy by Ricardo da Silva Antunes, Lorenzo G. Quiambao, Aaron Sutherland, Ferran Soldevila, Sandeep Kumar Dhanda, Sandra K. Armstrong, Timothy J. Brickman, Tod Merkel, Bjoern Peters, Alessandro Sette

“…Here, we compare the T cell reactivity of original aP and wP priming for different antigens contained or not contained in the aP vaccine and define the basis of a full-scale genomic map of memory T cell reactivity to BP antigens in humans. …”
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Intein-mediated split SaCas9 for genome editing in plants by Danling Hu, Lizhe Hu, Yaqiang Lu, Xiao Dong, Xingyu Cao, Shasha Bai, Lingang Zhang, Dongming Li, Yongwei Sun

“…Frontiers in Genome Editing…”
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Predicting CTCF cell type active binding sites in human genome by Lu Chai, Jie Gao, Zihan Li, Hao Sun, Junjie Liu, Yong Wang, Lirong Zhang

“…Abstract The CCCTC-binding factor (CTCF) is pivotal in orchestrating diverse biological functions across the human genome, yet the mechanisms driving its cell type-active DNA binding affinity remain underexplored. …”
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Corrigendum: In-depth analysis of IS6110 genomic variability in the Mycobacterium tuberculosis complex by Jessica Comín, Jessica Comín, Isabel Otal, Isabel Otal, Isabel Otal, Sofía Samper, Sofía Samper, Sofía Samper

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Draft genome sequence of Kei apple, an underutilized African tree crop by Robert Kariba, Bernice Waweru, Isaac Njaci, Linly Banda, Jenniffer W. Mwangi, Antso Harimanantsoa R, Samuel Muthemba, Jonathan Featherstone, Prasad Hendre, Ramni Jamnadass, Allen Van Deynze, Jean-Baka Domelevo Entfellner, Oluwaseyi Shorinola

“…We also annotated the genome and identified 27,449 protein-coding genes. …”
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Reversing the Negative Genomic Effects of Aging with Short-Term Calorie Restriction by Stephen R. Spindler

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Genome assembly of Hawaiian flower thrips Thrips hawaiiensis (Thysanoptera: Thripidae) by Xiaodi Hu, Houjun Tian, Yixin Chen, Yueqin Zheng, Hui Wei, Jian-Ping Chen, Chuan-Xi Zhang, Yong Chen, Yiyuan Li

“…Here, we sequenced the genome of T. hawaiiensis using Oxford Nanopore sequencing technology, Illumina, and Hi-C technology, yielding a genome assembly of 287.59 Mb with scaffold N50 of 13.84 Mb. …”
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Sex identification in rainbow trout using genomic information and machine learning by Andrei A. Kudinov, Antti Kause

“…Abstract Sex identification in farmed fish is important for the management of fish stocks and breeding programs, but identification based on visual characteristics is typically difficult or impossible in juvenile or premature fish. The amount of genomic data obtained from farmed fish is rapidly growing with the implementation of genomic selection in aquaculture. …”
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Genomic scans for selection and runs of homozygosity in southern Italian turkey populations by Medhat S. Saleh, Vincenzo Landi, Martijn F.L. Derks, Gerardo Centoducati, Martien A.M. Groenen, Pasquale De Palo, Elena Ciani, Nicola Pugliese, Elena Circella, Antonio Camarda

Subjects: “…Whole genome analysis…”
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Genome sequence of Vibrio sp. OULL4 isolated from shellfish by Vengadesh Letchumanan, Wen-Si Tan, Wai-Fong Yin, Kok-Gan Chan

“…The availability of this genome sequence will facilitate the study of its antimicrobial traits, as well as add our knowledge of Vibrio sp. diversity and evolution. …”
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A chromosome-level genome assembly of the cabbage aphid Brevicoryne brassicae by Jun Wu, Guomeng Li, Zhimou Lin, Yangzhi Zhang, Wenyuan Yu, Rong Hu, Shuai Zhan, Yazhou Chen

“…The final assembled genome size was 429.99 Mb, with a scaffold N50 of 93.31 Mb. …”
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Chromosome-level genome assembly and annotation of Japanese anchovy (Engraulis japonicus) by Shufang Liu, Le Wang, Ruixiang Wang, Huan Wang, Ang Li, Changting An, Zining Meng, Zhimeng Zhuang

“…The genome sequence exhibited a remarkable degree of completeness, valued 94.07% of the complete BUSCO. …”
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Comparative Study of Genome Divergence in Salmonids with Various Rates of Genetic Isolation by Elena A. Shubina, Mikhail A. Nikitin, Ekaterina V. Ponomareva, Denis V. Goryunov, Oleg F. Gritsenko

“…International Journal of Genomics…”
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Random Mutagenesis of the Aspergillus oryzae Genome Results in Fungal Antibacterial Activity by Cory A. Leonard, Stacy D. Brown, J. Russell Hayman

“…The results of this study support our hypothesis and suggest that the screen used is sufficient and appropriate to detect secreted antibacterial fungal compounds resulting from mutagenesis of A. oryzae. Because the genome of A. oryzae has been sequenced and systems are available for genetic transformation of this organism, targeted as well as random mutations may be introduced to facilitate the discovery of novel antibacterial compounds using this system.…”
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The complete mitochondrial genome of the common dace Leuciscus leuciscus (Teleostei: Leuciscidae) by Vincent Haÿ, Richard Pividori, Agnès Dettai, Bo Delling, Gaël P. J. Denys

“…This study presents, for the first time, the complete mitochondrial genome of the Common Dace (Leuciscus leuciscus (Linnaeus 1758)), in association with a voucher specimen from the Swedish Natural History Museum. …”
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