NEIL3 Mediates Lung Cancer Progression and Modulates PI3K/AKT/mTOR Signaling: A Potential Therapeutic Target by Hongbo Huang, Qingwang Hua

“…The public data used in this study were downloaded from The Cancer Genome Atlas (TCGA) database. “Limma” in R was used for the analysis of differentially expressed genes. …”
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Multi‐omics graph convolutional networks for digestive system tumour classification and early‐late stage diagnosis by Lin Zhou, Zhengzhi Zhu, Hongbo Gao, Chunyu Wang, Muhammad Attique Khan, Mati Ullah, Siffat Ullah Khan

“…A rigorous experimental evaluation was undertaken on the DST dataset from The Cancer Genome Atlas to scrutinise the efficacy of the MGTCN model. …”
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Single-cell transcriptomes reveal spatiotemporal heat stress response in maize roots by Ting Wang, Fanhua Wang, Shuhan Deng, Kailai Wang, Dan Feng, Fan Xu, Weijun Guo, Jia Yu, Yue Wu, Hada Wuriyanghan, Shang-Tong Li, Xiaofeng Gu, Liang Le, Li Pu

“…These results provide a universal atlas for unraveling the transcriptional programs that specify and maintain the cell identity of maize roots in response to HS at a cell type-specific level.…”
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Effective strategies for coordinated rehabilitation by L. Shuranova, J. Vacková, K. Rimárová, A. Hryshchuk

“…The data were analysed using ATLAS.ti software and different coding strategies [1]. …”
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Enhancing unsupervised learning in medical image registration through scale-aware context aggregation by Yuchen Liu, Ling Wang, Xiaolin Ning, Yang Gao, Defeng Wang

“…Extensive experiments on 3D medical images across five applications—atlas-to-patient and inter-patient brain magnetic resonance imaging (MRI) registration, inter-modal brain MRI registration, inter-patient liver computed tomography (CT) registration as well as inter-modal abdomen MRI-CT registration—demonstrate that our model significantly outperforms existing methods, highlighting its effectiveness and broader implications for enhancing medical image registration techniques.…”
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The role of MRO as an M2 macrophage-associated gene in non-small cell lung cancer: insights into immune infiltration, prognostic significance, and therapeutic implications by Yue Gu, Miaosen Zheng, Jing Xie

“…Methods NSCLC samples from The Cancer Genome Atlas (TCGA) were analyzed using the CIBERSORT algorithm to quantify immune cell compositions. …”
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Practical insights for enhancing primary care rehabilitation services in low-resource contexts by Maria Y. Charumbira, Karina Berner, Quinette A. Louw

“…Thematic analysis of transcribed and translated data was done in ATLAS.ti version 22.2.4. Results: Five key recommendations emerged: (1) provide rehabilitation services closer to home through facility-based services, outreach, home visits and telerehabilitation; (2) improve patient awareness of rehabilitation through patient education, community engagement and patients actively seeking information; (3) enhance PCPs’ knowledge and basic skills in rehabilitation through training and guideline development; (4) improve communication among PHC stakeholders; and (5) advocate for rehabilitation inclusion in leadership, resource allocation and multi-disciplinary teams. …”
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La violencia escolar desde la infancia hasta la juventud by Laura Oliva-Zárate

“…El análisis cualitativo de los datos se realizó mediante el programa ATLAS.ti.  Los resultados indicaron la existencia de violencia en todos los niveles escolares estudiados.  …”
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A Distribution Adaptive Feedback Training Method to Improve Human Motor Imagery Ability by Yukun Zhang, Chuncheng Zhang, Rui Jiang, Shuang Qiu, Huiguang He

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ATClean: A Novel Method for Detecting Low-luminosity Transients and Application to Pre-explosion Counterparts from SN 2023ixf by S. Rest, A. Rest, C. D. Kilpatrick, J. E. Jencson, S. von Coelln, L. Strolger, S. Smartt, J. P. Anderson, A. Clocchiatti, D. A. Coulter, L. Denneau, S. Gomez, A. Heinze, R. Ridden-Harper, K. W. Smith, B. Stalder, J. L. Tonry, Q. Wang, Y. Zenati

“…In an effort to search for faint sources of emission over arbitrary timescales, we present a novel method for analyzing forced photometry light curves in difference imaging from optical surveys. Our method “ATLAS Clean,” or ATClean, utilizes the reported fluxes, uncertainties, and fits to the point-spread function (PSF) from difference images to quantify the statistical significance of individual measurements. …”
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Lipid Metabolism-Related Gene Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Advanced Gastric Cancer by Lijian He, Qiange Ye, Yanmei Zhu, Wenqi Zhong, Guifang Xu, Lei Wang, Zhangding Wang, Xiaoping Zou

“…We obtained gene expression profiles from The Cancer Genome Atlas (TCGA) database for early and advanced gastric cancer samples and performed differential expression analysis to identify specific lipid metabolism-related genes in AGC. …”
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Developing a novel model for predicting overall survival in late-onset colon adenocarcinoma patients based on LODDS: a study based on the SEER database and external validation by Chen Chen, Heng-Bo Xia, Wei-Wei Yuan, Meng-Ci Zhou, Xue Zhang, A.-Man Xu

“…Results A total of 103,291 and 100 patients with late-onset colon adenocarcinoma (50–80 years old) were screened from the Surveillance, Epidemiology, and End Results (SEER) and The Cancer Genome Atlas (TCGA) databases, respectively. Cox regression analysis revealed independent risk factors for OS and CSS, including age, gender, race, size, LODDS stage, PLN stage, LNR stage, and TNM stage. …”
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Land Rights, Land Ownership, and Land Governance among Rural Communities in River Tana County, Kenya: A Gender Perspective by Wilson Ndenyele, Marie-Emmanuelle, Halimu Suleimani Shauri, Godffrey Nato

“…Transcripts were uploaded on Atlas ti computer software for in-depth analysis, through finding meaning of data, coding, developing patterns, creating themes, and presenting them with respective to the research objectives. …”
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CDC25B Is a Prognostic Biomarker Associated With Immune Infiltration and Drug Sensitivity in Hepatocellular Carcinoma by Zixiang Huang, Liangzhi Xu, Zhengqiang Wu, Xiaofeng Xiong, Linfei Luo, Zhili Wen

“…CDC25B expression data of HCC cancer tissues and paracancerous normal samples were obtained from The Cancer Gene Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, and the relationship between CDC25B expression and the prognosis and degree of tumor differentiation of HCC patients was analyzed. …”
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Migratory Dates, Breeding Phenology, and Reproductive Success of European Turtle Doves between Lowlands and Highest Breeding Habitats in North Africa by Ismail Mansouri, Mohamed Mounir, Wafae Squalli, Laila Elhanafi, Mohamed Dakki, Lahsen El Ghadraoui

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Configuración subjetiva del afrontamiento psicológico a la COVID-19 de adolescentes convalecientes del primer rebrote by Miguel Angel Toledo Mendez, Isaac Iran Cabrera Ruiz, Addys Pérez Fernandez

“…El análisis de los contenidos se procesó con la herramienta ATLAS.ti. Resultados: El afrontamiento psicológico a la COVID-19 de adolescentes convalecientes del primer rebrote de la enfermedad, se caracterizó por malestares psicológicos como el miedo y la tristeza, la valoración positiva del trabajo del personal de la salud, la limitada movilización de recursos resilientes y la escasa percepción de apoyo social. …”
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El sindicalismo “libre” y el movimiento sindical argentino desde mediados de los años ́40 a mediados de los años ́50 by Victoria Basualdo

“…En segundo lugar, sostiene que luego de la conformación de la CIOSL en 1949 y la ORIT en 1951, se profundizó esta confrontación cuando el posicionamiento geopolítico denominado “tercera posición” por parte del gobierno peronista promovió la conformación en 1952 del Comité de Unidad Sindical Latinoamericana (CUSLA) y luego de la Asociación de Trabajadores Latinoamericanos Sindicalistas (ATLAS). Estos fueron hitos muy importantes en las relaciones sindicales en la región que terminaron de marcar la relación de confrontación y rivalidad entre la CIOSL y ORIT y sectores mayoritarios del movimiento sindical argentino. …”
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Comprehensive analysis of the prognostic, immunological, and diagnostic roles of SIRT1 in pan-cancer and its validation in KIRC by Qi Liu, Songxian Sun, Chunxiang Zhou, Houxi Xu, Houxi Xu

“…Our study aimed to analyze the role of SIRT1 in pan-cancer to gain a more comprehensive understanding of its role in multiple malignancies.MethodsWe systematically examined the role of SIRT1 in pan-cancer by analyzing data from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases. …”
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Kruppel-family zinc finger proteins as emerging epigenetic biomarkers in head and neck squamous cell carcinoma by Patrick Pearson, Kendra Smith, Nilita Sood, Elizabeth Chia, Alicia Follett, Michael B. Prystowsky, Simon Kirby, Thomas J. Belbin

“…Methods We examined prognostic significance of ZNF154 and ZNF132 expression and DNA methylation in independent patient cohort of about 500 head and neck cancer patients in the Cancer Genome Atlas (TCGA). We also overexpressed these genes in HEK-293 cells, as well as the oral cancer cell line UM-SCC-1. …”
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DNA methylation of ACADS promotes immunogenic cell death in hepatocellular carcinoma by Ze Qian, Yifan Jiang, Yacong Wang, Yu Li, Lin Zhang, Xiaofeng Xu, Diyu Chen

“…Methods and results Using RNA sequencing data from different tumours in The Cancer Genome Atlas database, we observed that ACADS was downregulated and hypermethylated in HCC. …”
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