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    COVFlow: phylodynamics analyses of viruses from selected SARS-CoV-2 genome sequences by Danesh, Gonché, Boennec, Corentin, Verdurme, Laura, Roussel, Mathilde, Trombert-Paolantoni, Sabine, Visseaux, Benoit, Haim-Boukobza, Stéphanie, Alizon, Samuel

    Published 2023-10-01
    “…We introduce the COVFlow pipeline, accessible at https://gitlab.in2p3.fr/ete/CoV-flow, which allows a user to select sequences from the Global Initiative on Sharing Avian Influenza Data (GISAID) database according to user-specified criteria, to perform basic phylogenetic analyses, and to produce an XML file to be run in the Beast2 software package. …”
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