Identification of Functional Modules and Key Pathways Associated with Innervation in Graft Bone—CGRP Regulates the Differentiation of Bone Marrow Mesenchymal Stem Cells via p38 MAP... by Ziqian Wu, Xudong Wang, Jingcun Shi, Anand Gupta, Yuhan Zhang, Bingqing Zhang, Yang Cao, Lei Wang

“…We identified differentially expressed genes) from these samples and used the gene ontology and Kyoto Encyclopedia of Genes and Genomes databases for functional enrichment and signaling pathway analysis. …”
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Artificial Intelligence in Lymph Node Metastasis Prediction for T1 Colorectal Cancer: Promise and Challenges by Jung Ho Bae

“…Methods: This single-center, randomized, parallel-group clinical trial included patients aged 20 to 85 years admitted to Kyoto University Hospital for biliary strictures. …”
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Identification of Signal Pathways and Hub Genes of Pulmonary Arterial Hypertension by Bioinformatic Analysis by Rui-Qi Wei, Wen-Mei Zhang, Zhe Liang, Chunmei Piao, Guangfa Zhu

“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed and visualized by R and Cytoscape software. …”
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Bioinformatics Analysis of Exercise-Related Biomarkers in Diabetes by Xiaoju Bao, Jingyue Qiu, Qin Xuan, Xinming Ye

“…Then, the enrichment analysis of DEGs in Gene Ontology (GO) function was analyzed by Metascape, and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway of DEGs was also analyzed by gene set enrichment analysis (GSEA). …”
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The Immune Landscape of Hepatitis B Virus-Related Acute Liver Failure by Integration Analysis by Jiao Gong, Yaqiong Chen, Jing Cao, Yang Wang, Jiahao Chen, Danyang Li, Liuping Sha, Xinhua Li, Yutian Chong, Bo Hu

“…The enrichment scores of cell death gene sets from Kyoto Encyclopedia of Genes and Genomes (KEGG) were calculated by gene set variation analysis method, and a protein-protein interaction (PPI) network was constructed using Cytoscape. …”
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Identification of Differentially Expressed lncRNAs in a CpG ODN-Activated Macrophage by Ying Zheng, Xi Luo, Zailong Qin, Zhiguang Zhou

“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathway analyses were performed to predict the functions of dysregulated genes. …”
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RNA Sequencing Reveals the Differentially Expressed circRNAs between Stable and Unstable Carotid Atherosclerotic Plaques by Xueguang Lin, Ying Deng, Lujuan Ye, Bo Chen, Jindong Tong, Weijun Shi, Bo Wang, Bo Yu, Jingdong Tang

“…Functional evaluation of the DE circRNAs was conducted via Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. …”
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Changes and their effects on working and daily life time use allocation between work-from-home and office work days during the telework period: insights from the survey in Japan by Eri Aoki, Eri Aoki, Ai Hiramatsu, Keisuke Hanaki

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Non-targeted Metabolomic Analysis of Differences in the Composition of Different Rice Varieties for Baijiu Production by LIU Maoke, TIAN Xinhui, LIU Yao, TANG Yuming, QIN Jian, FENG Jun, LIU Chengyuan

“…A comparison between PXY and JKY yielded 326 differential metabolites (variable importance in projection (VIP) > 1 and P < 0.05), including the major components of Baijiu, such as lactic acid, ferulic acid and fumaric acid, as well as important substrates that supported brewing microorganism growth, such as melibiose, maltose, glucose and lactulose. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of differential metabolites identified 16 significantly differential biological pathways (P < 0.05), of which 14 were assigned to metabolic functions, including those related to Baijiu brewing such as galactose metabolism, the biosynthesis of unsaturated fatty acids, fatty acid biosynthesis, and butanoate metabolism. …”
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Effect of Instituting Upper Limits for Chest Compression Depth for Laypersons at Six-months After Chest Compression-Only Training: A Randomized Controlled Simulation Study

“…All participants completed a 15-min chest compression training session, and their compression skills were individually evaluated immediately and at 6 months after the training using the Laerdal® PC SkillReporting System at Kyoto University. The primary outcome was the median compression depth during the 2-min test period 6 months after the training.Results: Seventy-two participants were enrolled; 33 participants in each group completed the study. …”
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Seismic performance of bridge pier integrated by multiple steel pipes with directly-connected piles using soil-water coupled three-dimensional elasto-plastic finite element analysi... by Muhammad Mahmood Ul Hassan, Koichi Isobe, Yasumasa Soga, Yasuo Sawamura, Hiroki Sugiyama, Masatsugu Shinohara

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Eski Uygurca Vimalakīrtinirdeśa-sūtra Tefsirine İlişkin Fragmanlar by Uğur Uzunkaya

“…Eski Uygurca Vimalakīrtinirdeśa-sūtra bugün Berlin, Kyōto ve İstanbul’da bulunan fragmanlardan oluşan bir metindir. …”
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Deciphering the dose-dependent effects of thymoquinone on cellular proliferation and transcriptomic changes in A172 glioblastoma cells. by Rachana Pandey, Purushothaman Natarajan, Umesh K Reddy, Wei Du, Cristian Sirbu, Moussa Sissoko, Gerald R Hankins

“…We confirmed their expression levels through quantitative RT-PCR and performed Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses for these DEGs. …”
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Advancing neutron imaging techniques to highest resolution with fluorescent nuclear track detectors by Abdul Muneem, Junya Yoshida, Takehiko R. Saito, Hiroyuki Ekawa, Masahiro Hino, Katsuya Hirota, Go Ichikawa, Ayumi Kasagi, Masaaki Kitaguchi, Kenji Mishima, Jameel-Un Nabi, Manami Nakagawa

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Identification of Differentially Expressed Genes in Pituitary Adenomas by Integrating Analysis of Microarray Data by Peng Zhao, Wei Hu, Hongyun Wang, Shengyuan Yu, Chuzhong Li, Jiwei Bai, Songbai Gui, Yazhuo Zhang

“…Gene function analysis including Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, and protein-protein interaction (PPI) networks analysis was conducted to interpret the biological role of those DEGs. …”
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Identification of mitophagy-related biomarkers and immune infiltration in polycystic ovarian syndrome by bioinformatic study by Hongjuan Ye, Xicheng Wang, Zhiying He

“…Gene ontology annotations and Kyoto encyclopedia of genes and genomes signaling pathway enrichment analysis were performed. …”
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Construction and validation of a senescence-related gene signature for early prediction and treatment of osteoarthritis based on bioinformatics analysis by Yonggang Wang, Zhihao Li, Xiaolong Xu, Xin Li, Rongxiang Huang, Guofeng Wu

“…Differentially expressed senescence-related genes (DESRGs) selected from Cellular senescence-related genes (SRGs) and differentially expressed genes (DEGs) were analyzed using Gene Ontology enrichment, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and protein–protein interaction networks. …”
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Türkiye’de Karbon Histerisinin Geçerliliğinin RALS-LM Birim Kök Testi ile Analizi by Kerem Fırat Coşkun, Özge Buzdağlı

“…Türkiye’nin de dahil olduğu ve 100’den fazla ülkenin imzaladığı Kyoto Protokolü’nde CO2 emisyonlarının azaltılmasına yönelik hedefler belirlenmiştir. …”
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Spatiotemporal variations in integrated trophic positions of stream macroinvertebrate communities by Naoto F. Ishikawa, Yoshitoshi Uehara, Takuya Ishida, Tohru Ikeya, Satoshi Asano, Chia-Ying Ko, Tomoya Iwata, Ichiro Tayasu, Naohiko Ohkouchi, Noboru Okuda

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Construction of a potentially functional long noncoding RNA-microRNA-mRNA network in diabetic cardiomyopathy by Qiwen Cao, Zhihui Dong, Yangbo Xi, Jiana Zhong, Jianzhong Huang, Qunfeng Yang

“…Materials and Methods: Three expression profiles datasets (GSE161827, GSE161931, and GSE241166) were collected from gene expression omnibus database and then integrated for the identification of differentially expressed genes (DEGs). Gene Ontology, Kyoto Encyclopedia of Gene and Genome pathway analysis, and Gene set enrichment analysis (GSEA) were employed for functional analysis. …”
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