Nuclear Protein 1 Expression Is Associated with PPARG in Bladder Transitional Cell Carcinoma by Chao Lu, Shenglin Gao, Li Zhang, Xiaokai Shi, Yin Chen, Shuzhang Wei, Li Zuo, Lifeng Zhang

“…We further performed an Affymetrix microarray and Gene Set Enrichment Analysis (GSEA) to assess the genes and signaling pathways related to Nuclear protein 1. …”
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Effect of Combining Multiple CNV Defining Algorithms on the Reliability of CNV Calls from SNP Genotyping Data by Soon-Young Kim, Ji-Hong Kim, Yeun-Jun Chung

“…Our result will be helpful to set up the CNV analysis protocols for Affymetrix Genomewide SNP 5.0 genotyping data.…”
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Web-Based Database and Viewer of East Asian Copy Number Variations by Ji-Hong Kim, Hae-Jin Hu, Yeun-Jun Chung

“…We have discovered copy number variations (CNVs) in 3,578 Korean individuals with the Affymetrix Genome-Wide SNP array 5.0, and 4,003 copy number variation regions (CNVRs) were defined in a previous study. …”
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Exceptional Response of Metastatic Chromophobe Renal Cell Carcinoma to Vascular Endothelial Growth Factor (VEGF) Inhibitors: Should Increased VEGF-C Expression Be Used to Guide Tre... by Jacob W. Bruinius, Karl J. Dykema, Sabrina L. Noyes, Bin Tean Teh, Brian R. Lane

“…Tumor gene expression profiling using Affymetrix HG-U133 Plus 2.0 GeneChip platform demonstrated significantly elevated VEGF-C expression compared to normal renal tissue n=12 and other types RCC n=158. …”
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Possibility of the Use of Public Microarray Database for Identifying Significant Genes Associated with Oral Squamous Cell Carcinoma by Ki-Yeol Kim, In-Ho Cha

“…There were different expression scales between the two datasets, even though these datasets were generated under the same platforms - Affymetrix U133A gene chips. We discretized gene expressions of the two datasets by adjusting the differences between the datasets for detecting the more reliable information. …”
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Risk Prediction Using Genome-Wide Association Studies on Type 2 Diabetes by Sungkyoung Choi, Sunghwan Bae, Taesung Park

“…We first built a prediction model by combining variable selection and prediction methods for type 2 diabetes using Affymetrix Genome-Wide Human SNP Array 5.0 from the Korean Association Resource project. …”
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颅内动脉瘤信号传导相关基因的筛选 by 石忠松, 李明昌, 孙毅明, 朱永华, 戴华浩, 潘伟生, 黄正松

“…【方法】50例颅内动脉瘤患者外周血,10例正常成人作为对照组,分离血液单核细胞,提取总RNA,与含22215个人类基因的Affymetrix寡核苷酸基因芯片杂交、洗脱、染色和扫描,分析检测的数据。荧光定量RT-PCR验证芯片结果。…”
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Copy Number Variation of UGT 2B Genes in Indian Families Using Whole Genome Scans by Avinash M. Veerappa, Prakash Padakannaya, Nallur B. Ramachandra

“…We investigated the presence of CNVs in UGT2B genes in 31 members from eight Indian families using Affymetrix Genome-Wide Human SNP Array 6.0 chip. Results. …”
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Non-negligible Occurrence of Errors in Gender Description in Public Data Sets by Jong Hwan Kim, Jong-Luyl Park, Seon-Young Kim

“…We also analyzed 1,819 samples produced using the Affymetrix U133Plus2 array using several gender-specific genes (X (inactive)-specific transcript [XIST], eukaryotic translation initiation factor 1A, Y-linked [EIF1AY], and DEAD [Asp-Glu-Ala-Asp] box polypeptide 3, Y-linked [DDDX3Y]) and found that 40 samples from 3 datasets were erroneously described. …”
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Bioinformatics Based Drug Repurposing Approach for Breast and Gynecological Cancers: RECQL4/FAM13C Genes Address Common Hub Genes and Drugs by Gizem Ayna Duran

“…Materials and Methods: Gene intensity values of breast cancer, gynaecological cancers such as cervical, ovarian and endometrial cancers were used from the Gene Expression Omnibus database Affymetrix Human Genome U133 Plus 2.0 Array project. …”
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Gene Expression Profiling in Dermatitis Herpetiformis Skin Lesions by M. Dolcino, E. Cozzani, S. Riva, A. Parodi, E. Tinazzi, C. Lunardi, A. Puccetti

“…In order to investigate the pathogenesis of skin lesions at molecular level, we analysed the gene expression profiles in skin biopsies from 6 CD patients with DH and 6 healthy controls using Affymetrix HG-U133A 2.0 arrays. 486 genes were differentially expressed in DH skin compared to normal skin: 225 were upregulated and 261 were downregulated. …”
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Concordance between Immunohistochemistry and Microarray Gene Expression Profiling for Estrogen Receptor, Progesterone Receptor, and HER2 Receptor Statuses in Breast Cancer Patients... by Ghina B. Fakhri, Reem S. Akel, Maya K. Khalil, Deborah A. Mukherji, Fouad I. Boulos, Arafat H. Tfayli

“…Gene expression profiling was performed using the GeneChip Human Genome U133 Plus 2.0 arrays (Affymetrix Inc). Immunohistochemical staining for estrogen receptor, progesterone receptor, and HER2 status was performed using standard methods at a CAP-accredited pathology laboratory. …”
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Genetic Uniqueness and Pomological Diversity Among the Apple Accessions Maintained Within the Croatian National Clonal Germplasm Repository by Danijel Čiček, Almira Konjić, Martina Skendrović Babojelić, Predrag Vujević, Silvio Šimon, Fuad Gaši

“…In order to assess the advantage of a high-resolution marker system, such as SNPs, compared to low-resolution markers, such as SSRs, a subset of 23 unique apple accessions and eight reference cultivars were genotyped using the 480K Affymetrix Axiom SNP array. Results obtained through the use of two marker systems revealed 26 synonyms, 40 duplicates, 13 mislabeling accessions, 45 accessions with confirmed identity (known cultivars), and 45 unique accessions, as well as the true identity of a large number of accessions, currently maintained at the Croatian National Apple Germplasm Bank. …”
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Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population by Niskanen, Alina K., Kujala, Sonja T., Kärkkäinen, Katri, Savolainen, Outi, Pyhäjärvi, Tanja

“…We genotyped almost 500 adult trees for 150k SNPs using a custom made Affymetrix array. We detected some pairwise relatedness at short distances, but the average relatedness was low and decreased with increasing distance, as expected. …”
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MicroRNA Expression Profiling in Behçet’s Disease by Antonio Puccetti, Andrea Pelosi, Piera Filomena Fiore, Giuseppe Patuzzo, Claudio Lunardi, Marzia Dolcino

“…Methods. miRNA microarray analysis was performed in blood cells of BD patients and healthy controls. miRNA expression profiles were analyzed using Affymetrix arrays with a comprehensive coverage of miRNA sequences. …”
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Gene Expression Differences Predict Treatment Outcome of Merkel Cell Carcinoma Patients by Loren Masterson, Bryan J. Thibodeau, Laura E. Fortier, Timothy J. Geddes, Barbara L. Pruetz, Rajwant Malhotra, Richard Keidan, George D. Wilson

“…Laser capture microdissection was used to isolate tumor cells for subsequent RNA isolation and gene expression analysis with Affymetrix GeneChip Human Exon 1.0 ST arrays. Among the 191 genes demonstrating significant differential expression between prognostic groups, keratin 20 and neurofilament protein have previously been identified in studies of MCC and were significantly upregulated in tumors from patients with a poor prognosis. …”
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Qatari Genotype May Contribute to Complications in Type 2 Diabetes by Youssra Dakroury, Stephen L. Atkin, Soha R. Dargham, Amal Robay, Juan Rodriguez-Flores, Ronald G. Crystal, Alexandra E. Butler

“…In this cross-sectional study, 398 Qatari subjects, 220 with and 178 without T2DM, were genotyped by Affymetrix 500k SNP arrays. Ancestry was correlated with diabetes complications. …”
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Evaluation of genetic differences between two autochthonous Spanish cattle breeds by Paola E. Milia, Alberto Cesarani, Clara Diaz, Cristina Meneses, Juan Carlos Parejo, Laura Falchi, Nicolò P. P. Macciotta, Corrado Dimauro

“…A total of 4,137 animals (2,785 ANI, 333 BOC, 127 JAR, 263 MORB and 629 MORC) were genotyped with the Affymetrix Beadchip Microarray HD. After quality control, 30,391 common SNPs were retained. …”
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单绒毛膜双羊膜囊双胎心脏畸形拷贝数变异分布的差异 by 彭软, 谢红宁, 林美芳, 郑菊

“…【方法】MCDA双胎合并先心病病例接受胎儿染色体核型检查和染色体微阵列检测，采用Affymetrix CytoScan 高 分辨微阵列平台。【结果】从2010年至2016年，114例MCDA双胎合并心脏畸形且类型不一致，4例合并心脏畸形 且类型一致。…”
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Egfr Amplification Specific Gene Expression in Phyllodes Tumours of the Breast by Konstantin Agelopoulos, Christian Kersting, Eberhard Korsching, Hartmut Schmidt, Arno Kuijper, Christian August, Pia Wülfing, Joke Tio, Werner Boecker, Paul J. van Diest, Burkhard Brandt, Horst Buerger

“…Methods: In order to gain further insights into regulation mechanisms associated with egfr amplifications and EGFR expression in phyllodes tumours, we performed global gene expression analysis (Affymetrix A133.2) on a series of 10 phyllodes tumours, of these three with and seven without amplifications of an important regulatory repeat in intron 1 of egfr (CA-SSR I). …”
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