Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association

Abstract The many successes of AlphaFold2 (AF2) have inspired methods to predict multiple protein conformations, many of which have biological significance. These methods often assume that AF2 relies on evolutionary couplings to predict alternative protein conformations, but they perform poorly on f...

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Bibliographic Details
Main Authors: Myeongsang Lee, Joseph W. Schafer, Jeshuwin Prabakaran, Devlina Chakravarty, Madeleine F. Clore, Lauren L. Porter
Format: Article
Language:English
Published: Nature Portfolio 2025-07-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-60759-5
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