The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea
Carex pseudochinensis H. Lév. & Vaniot is an endemic species in Korea and is included in the clade of section Paludosae in the recent classification system. We present the complete mitochondrial genome sequence of C. pseudochinensis based on the POLAP pipeline with both long- and short-read sequ...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2025-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2449090 |
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| author | Jieun Lee Sang Chul Choi Sangtae Kim |
| author_facet | Jieun Lee Sang Chul Choi Sangtae Kim |
| author_sort | Jieun Lee |
| collection | DOAJ |
| description | Carex pseudochinensis H. Lév. & Vaniot is an endemic species in Korea and is included in the clade of section Paludosae in the recent classification system. We present the complete mitochondrial genome sequence of C. pseudochinensis based on the POLAP pipeline with both long- and short-read sequences. The mitochondrial genome is 997,628 bp in length, containing two large regions of 536.94 and 419.04 kbp, respectively, and a pair of direct repeat regions of about 20.25 kbp. The genome contains 57 genes, including 31 protein-coding genes, 20 tRNAs, and 6 rRNAs. Phylogenetic analysis based on mitochondrial proteomes, including those from ten species of related taxa, confirmed a close phylogenetic relationship between C. breviculmis and C. pseudochinensis. |
| format | Article |
| id | doaj-art-fcd0c0faf97c469684ada6d506170386 |
| institution | Kabale University |
| issn | 2380-2359 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj-art-fcd0c0faf97c469684ada6d5061703862025-01-09T05:23:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592025-01-01101889310.1080/23802359.2024.2449090The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in KoreaJieun Lee0Sang Chul Choi1Sangtae Kim2Department of Biology, Sungshin Women’s University, Seoul, Republic of KoreaDepartment of Biology, Sungshin Women’s University, Seoul, Republic of KoreaDepartment of Biology, Sungshin Women’s University, Seoul, Republic of KoreaCarex pseudochinensis H. Lév. & Vaniot is an endemic species in Korea and is included in the clade of section Paludosae in the recent classification system. We present the complete mitochondrial genome sequence of C. pseudochinensis based on the POLAP pipeline with both long- and short-read sequences. The mitochondrial genome is 997,628 bp in length, containing two large regions of 536.94 and 419.04 kbp, respectively, and a pair of direct repeat regions of about 20.25 kbp. The genome contains 57 genes, including 31 protein-coding genes, 20 tRNAs, and 6 rRNAs. Phylogenetic analysis based on mitochondrial proteomes, including those from ten species of related taxa, confirmed a close phylogenetic relationship between C. breviculmis and C. pseudochinensis.https://www.tandfonline.com/doi/10.1080/23802359.2024.2449090CyperaceaeOxford nanoporePoalesPOLAPphylogenomics |
| spellingShingle | Jieun Lee Sang Chul Choi Sangtae Kim The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea Mitochondrial DNA. Part B. Resources Cyperaceae Oxford nanopore Poales POLAP phylogenomics |
| title | The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea |
| title_full | The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea |
| title_fullStr | The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea |
| title_full_unstemmed | The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea |
| title_short | The mitochondrial genome of Carex pseudochinensis H. Lév. & Vaniot, an endemic sedge in Korea |
| title_sort | mitochondrial genome of carex pseudochinensis h lev vaniot an endemic sedge in korea |
| topic | Cyperaceae Oxford nanopore Poales POLAP phylogenomics |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2449090 |
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