STHD: probabilistic cell typing of single spots in whole transcriptome spatial data with high definition

Abstract Recent advances in spatial transcriptomics technologies have enabled gene expression profiling across the transcriptome in spots with subcellular resolution, but high sparsity and dimensionality present significant computational challenges. We present STHD for probabilistic cell typing of s...

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Bibliographic Details
Main Authors: Chuhanwen Sun, Yi Zhang
Format: Article
Language:English
Published: BMC 2025-07-01
Series:Genome Biology
Subjects:
Online Access:https://doi.org/10.1186/s13059-025-03608-4
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