Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina
Abstract Eriocraniidae (Lepidoptera) are widespread leaf miners and have unique adaptability to hypoxia and low temperatures, causing covert but devastating harm to Fagales (Betulaceae and Fagaceae) plants in the Holarctic. However, the lack of a high-quality genome of this most ancient family withi...
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Nature Portfolio
2025-01-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-024-04353-2 |
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| author | Gui-fang Wang Jin-wu He Cheng Sun Xue-yan Li Pei-feng Qi Dan-dan Feng Cai-qing Yang Ai-bing Zhang |
| author_facet | Gui-fang Wang Jin-wu He Cheng Sun Xue-yan Li Pei-feng Qi Dan-dan Feng Cai-qing Yang Ai-bing Zhang |
| author_sort | Gui-fang Wang |
| collection | DOAJ |
| description | Abstract Eriocraniidae (Lepidoptera) are widespread leaf miners and have unique adaptability to hypoxia and low temperatures, causing covert but devastating harm to Fagales (Betulaceae and Fagaceae) plants in the Holarctic. However, the lack of a high-quality genome of this most ancient family within the angiosperm-feeding group largely limits the studies on the phylogeny and environmental adaptation of the primitive Lepidoptera. In this study, utilizing Illumina sequencing, PacBio HiFi sequencing, and Hi-C technology, we constructed a chromosome-level genome assembly of E. semipurpurella alpina, representing the first high-quality genome in the Eriocraniidae family. The genome was 523.71 Mb in length, with a scaffold N50 of 17.55 Mb, and 95.56% of the assembly anchored onto 32 pseudochromosomes. BUSCO completeness values of 97.6%. 49.02% of the genome sequences were recognized as repetitive sequences, and a total of 22,581 protein-coding genes were annotated. This genome will greatly facilitate the phylogenomic studies of the most ancient lineages of Lepidoptera and provides insights into the genetic architectures underlying ecological adaptation. |
| format | Article |
| id | doaj-art-f1d6136c5a774f039c3ca5d1621017ee |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Nature Portfolio |
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| series | Scientific Data |
| spelling | doaj-art-f1d6136c5a774f039c3ca5d1621017ee2025-01-05T12:08:19ZengNature PortfolioScientific Data2052-44632025-01-011211810.1038/s41597-024-04353-2Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpinaGui-fang Wang0Jin-wu He1Cheng Sun2Xue-yan Li3Pei-feng Qi4Dan-dan Feng5Cai-qing Yang6Ai-bing Zhang7College of Life Sciences, Capital Normal UniversityKey Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS)College of Life Sciences, Capital Normal UniversityKey Laboratory of Genetic Evolution & Animal Models, Kunming Institute of Zoology, Chinese Academy of Sciences (CAS)Beishan Forest Farm, Huzhu CountyCollege of Life Sciences, Capital Normal UniversityCollege of Life Sciences, Capital Normal UniversityCollege of Life Sciences, Capital Normal UniversityAbstract Eriocraniidae (Lepidoptera) are widespread leaf miners and have unique adaptability to hypoxia and low temperatures, causing covert but devastating harm to Fagales (Betulaceae and Fagaceae) plants in the Holarctic. However, the lack of a high-quality genome of this most ancient family within the angiosperm-feeding group largely limits the studies on the phylogeny and environmental adaptation of the primitive Lepidoptera. In this study, utilizing Illumina sequencing, PacBio HiFi sequencing, and Hi-C technology, we constructed a chromosome-level genome assembly of E. semipurpurella alpina, representing the first high-quality genome in the Eriocraniidae family. The genome was 523.71 Mb in length, with a scaffold N50 of 17.55 Mb, and 95.56% of the assembly anchored onto 32 pseudochromosomes. BUSCO completeness values of 97.6%. 49.02% of the genome sequences were recognized as repetitive sequences, and a total of 22,581 protein-coding genes were annotated. This genome will greatly facilitate the phylogenomic studies of the most ancient lineages of Lepidoptera and provides insights into the genetic architectures underlying ecological adaptation.https://doi.org/10.1038/s41597-024-04353-2 |
| spellingShingle | Gui-fang Wang Jin-wu He Cheng Sun Xue-yan Li Pei-feng Qi Dan-dan Feng Cai-qing Yang Ai-bing Zhang Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina Scientific Data |
| title | Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina |
| title_full | Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina |
| title_fullStr | Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina |
| title_full_unstemmed | Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina |
| title_short | Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina |
| title_sort | chromosome level genome assembly of a destructive leaf mining moth eriocrania semipurpurella alpina |
| url | https://doi.org/10.1038/s41597-024-04353-2 |
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