Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target

Abstract High-grade soft tissue sarcomas (STS) are a heterogeneous and aggressive set of cancers. Failure to respond anthracycline chemotherapy, standard first-line treatment, is associated with poor outcomes. We investigated the contribution of STS cancer stem cells (STS-CSCs) to doxorubicin resist...

Full description

Saved in:
Bibliographic Details
Main Authors: Edmond O’Donnell, Maria Muñoz, Ryan Davis, Jessica Bergonio, R. Lor Randall, Clifford Tepper, Janai Carr-Ascher
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:npj Precision Oncology
Online Access:https://doi.org/10.1038/s41698-024-00776-7
Tags: Add Tag
No Tags, Be the first to tag this record!
_version_ 1841545014789799936
author Edmond O’Donnell
Maria Muñoz
Ryan Davis
Jessica Bergonio
R. Lor Randall
Clifford Tepper
Janai Carr-Ascher
author_facet Edmond O’Donnell
Maria Muñoz
Ryan Davis
Jessica Bergonio
R. Lor Randall
Clifford Tepper
Janai Carr-Ascher
author_sort Edmond O’Donnell
collection DOAJ
description Abstract High-grade soft tissue sarcomas (STS) are a heterogeneous and aggressive set of cancers. Failure to respond anthracycline chemotherapy, standard first-line treatment, is associated with poor outcomes. We investigated the contribution of STS cancer stem cells (STS-CSCs) to doxorubicin resistance. We identified a positive correlation between CSC abundance and doxorubicin IC50. Utilizing patient-derived samples from five sarcoma subtypes we investigated if a common genetic signature across STS-CSCs could be targeted. We identified Enhancer of Zeste homolog 2 (EZH2), a member of the polycomb repressive complex 2 (PRC2) responsible for H3K27 methylation as being enriched in CSCs. EZH2 activity and a shared epigenetic profile was observed across subtypes and targeting of EZH2 ablated the STS-CSC population. Treatment of doxorubicin-resistant cell lines with tazemetostat resulted in a decrease in the STS-CSC population. These data confirm the presence of shared genetic programs across distinct subtypes of CSC-STS that can be therapeutically targeted.
format Article
id doaj-art-f0fa6d57acfc453eae35a0e0045d73b6
institution Kabale University
issn 2397-768X
language English
publishDate 2025-01-01
publisher Nature Portfolio
record_format Article
series npj Precision Oncology
spelling doaj-art-f0fa6d57acfc453eae35a0e0045d73b62025-01-12T12:06:21ZengNature Portfolionpj Precision Oncology2397-768X2025-01-019111110.1038/s41698-024-00776-7Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic targetEdmond O’Donnell0Maria Muñoz1Ryan Davis2Jessica Bergonio3R. Lor Randall4Clifford Tepper5Janai Carr-Ascher6Department of Orthopedic Surgery, University of California DavisDepartment of Internal Medicine, Division of Hematology/Oncology, University of California DavisDepartment of Pathology and Laboratory, University of California DavisDepartment of Internal Medicine, Division of Hematology/Oncology, University of California DavisDepartment of Orthopedic Surgery, University of California DavisDepartment of Pathology and Laboratory, University of California DavisDepartment of Orthopedic Surgery, University of California DavisAbstract High-grade soft tissue sarcomas (STS) are a heterogeneous and aggressive set of cancers. Failure to respond anthracycline chemotherapy, standard first-line treatment, is associated with poor outcomes. We investigated the contribution of STS cancer stem cells (STS-CSCs) to doxorubicin resistance. We identified a positive correlation between CSC abundance and doxorubicin IC50. Utilizing patient-derived samples from five sarcoma subtypes we investigated if a common genetic signature across STS-CSCs could be targeted. We identified Enhancer of Zeste homolog 2 (EZH2), a member of the polycomb repressive complex 2 (PRC2) responsible for H3K27 methylation as being enriched in CSCs. EZH2 activity and a shared epigenetic profile was observed across subtypes and targeting of EZH2 ablated the STS-CSC population. Treatment of doxorubicin-resistant cell lines with tazemetostat resulted in a decrease in the STS-CSC population. These data confirm the presence of shared genetic programs across distinct subtypes of CSC-STS that can be therapeutically targeted.https://doi.org/10.1038/s41698-024-00776-7
spellingShingle Edmond O’Donnell
Maria Muñoz
Ryan Davis
Jessica Bergonio
R. Lor Randall
Clifford Tepper
Janai Carr-Ascher
Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target
npj Precision Oncology
title Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target
title_full Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target
title_fullStr Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target
title_full_unstemmed Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target
title_short Genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies EZH2 as a therapeutic target
title_sort genetic and epigenetic characterization of sarcoma stem cells across subtypes identifies ezh2 as a therapeutic target
url https://doi.org/10.1038/s41698-024-00776-7
work_keys_str_mv AT edmondodonnell geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget
AT mariamunoz geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget
AT ryandavis geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget
AT jessicabergonio geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget
AT rlorrandall geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget
AT cliffordtepper geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget
AT janaicarrascher geneticandepigeneticcharacterizationofsarcomastemcellsacrosssubtypesidentifiesezh2asatherapeutictarget