Protocol for Cas9-targeted long-read sequencing in Globodera pallida and Globodera rostochiensis
Summary: We present a protocol to achieve a higher depth of long-read sequencing of region(s) of interest in potato cyst nematodes without amplification using a Cas9-based Nanopore enrichment approach. We describe steps for designing high-fidelity guide RNAs to be used with Cas9 nuclease, extracting...
Saved in:
| Main Authors: | Unnati Sonawala, Lida Derevnina, Sebastian Eves-van den Akker |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2024-12-01
|
| Series: | STAR Protocols |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2666166724005926 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
Toxic Effects of the Trap Crop Solanum sisymbriifolium on the Hatch and Viability of Globodera pallida
by: Schulz Lindsay, et al.
Published: (2024-08-01) -
The collection of potato cultivars as a source for breeding for high yield, earliness, and resistance to late blight, virus diseases and Globodera rostochiensis Woll
by: L. I. Kostina, et al.
Published: (2019-02-01) -
Analyses of Fungal Communities from Culture-Dependent and -Independent Studies Reveal Novel Mycobiomes Associated with Globodera and Heterodera Species
by: Blaise Jumbam, et al.
Published: (2024-11-01) -
Protocol for genetic analysis of population-scale ultra-low-depth sequencing data
by: Jingyu Zeng, et al.
Published: (2025-03-01) -
Computational protocol for analyzing whole-genome sequencing data from Staphylococcus aureus clinical isolates
by: Miquel Sánchez-Osuna, et al.
Published: (2025-03-01)