The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan
Viola vaginata, a perennial herb in subsection Stolonosae, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two i...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2025-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2444595 |
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| author | Yayoi Takahashi Masato Fujiwara Masaaki Ozeki Masayuki U. Saito Takaya Iwasaki |
| author_facet | Yayoi Takahashi Masato Fujiwara Masaaki Ozeki Masayuki U. Saito Takaya Iwasaki |
| author_sort | Yayoi Takahashi |
| collection | DOAJ |
| description | Viola vaginata, a perennial herb in subsection Stolonosae, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two inverted repeat regions (27,174 bp each). It contained 111 unique genes, including 77 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Phylogenetic analysis placed V. vaginata in a clade with subsection Biobatae species and some Patellares species, while other Patellares species formed a distinct clade, contrasting with previous nuclear ITS results. These findings highlight the phylogenetic complexity within Viola. |
| format | Article |
| id | doaj-art-de4db677aa364726b48acf5e210dd64c |
| institution | Kabale University |
| issn | 2380-2359 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj-art-de4db677aa364726b48acf5e210dd64c2025-01-09T05:23:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592025-01-01101475110.1080/23802359.2024.2444595The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in JapanYayoi Takahashi0Masato Fujiwara1Masaaki Ozeki2Masayuki U. Saito3Takaya Iwasaki4Graduate School of Humanities and Sciences, Ochanomizu University, Tokyo, JapanHyogo Prefectural Ono High School, Ono City, Hyogo, JapanNagano Environmental Conservation Research Institute, Nagano City, Nagano, JapanFaculty of Agriculture, Yamagata University, Tsuruoka City, Yamagata, JapanGraduate School of Humanities and Sciences, Ochanomizu University, Tokyo, JapanViola vaginata, a perennial herb in subsection Stolonosae, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two inverted repeat regions (27,174 bp each). It contained 111 unique genes, including 77 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Phylogenetic analysis placed V. vaginata in a clade with subsection Biobatae species and some Patellares species, while other Patellares species formed a distinct clade, contrasting with previous nuclear ITS results. These findings highlight the phylogenetic complexity within Viola.https://www.tandfonline.com/doi/10.1080/23802359.2024.2444595Chloroplast genomeViolaceaeViola vaginataendemicJapan |
| spellingShingle | Yayoi Takahashi Masato Fujiwara Masaaki Ozeki Masayuki U. Saito Takaya Iwasaki The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan Mitochondrial DNA. Part B. Resources Chloroplast genome Violaceae Viola vaginata endemic Japan |
| title | The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan |
| title_full | The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan |
| title_fullStr | The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan |
| title_full_unstemmed | The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan |
| title_short | The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan |
| title_sort | complete chloroplast genome of viola vaginata violaceae an endemic species of the snowy region in japan |
| topic | Chloroplast genome Violaceae Viola vaginata endemic Japan |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2444595 |
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