A Draft Transcriptome Announcement of Anguina tritici
Anguina tritici, the wheat seed gall nematode, causes the ‘ear-cockle’ or seed gall disease of wheat (Triticum sp.), leading to an extensive decline of yield (30–70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32...
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| Format: | Article |
| Language: | English |
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Sciendo
2024-03-01
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| Series: | Journal of Nematology |
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| Online Access: | https://doi.org/10.2478/jofnem-2024-0007 |
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| author | Kumar Manish Neeraj Hada Alkesh Somvanshi Vishal Singh Singh Ashish Kumar Yadava Yashwant Kumar Jain Pradeep Kumar Gaikwad Kishore Sirohi Anil |
| author_facet | Kumar Manish Neeraj Hada Alkesh Somvanshi Vishal Singh Singh Ashish Kumar Yadava Yashwant Kumar Jain Pradeep Kumar Gaikwad Kishore Sirohi Anil |
| author_sort | Kumar Manish |
| collection | DOAJ |
| description | Anguina tritici, the wheat seed gall nematode, causes the ‘ear-cockle’ or seed gall disease of wheat (Triticum sp.), leading to an extensive decline of yield (30–70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of A. tritici, which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing. |
| format | Article |
| id | doaj-art-d9c3cea0bf754d2b86ba7f04b7d98b2c |
| institution | Kabale University |
| issn | 2640-396X |
| language | English |
| publishDate | 2024-03-01 |
| publisher | Sciendo |
| record_format | Article |
| series | Journal of Nematology |
| spelling | doaj-art-d9c3cea0bf754d2b86ba7f04b7d98b2c2024-11-25T11:20:25ZengSciendoJournal of Nematology2640-396X2024-03-01561i884i89010.2478/jofnem-2024-0007A Draft Transcriptome Announcement of Anguina triticiKumar Manish0Neeraj1Hada Alkesh2Somvanshi Vishal Singh3Singh Ashish Kumar4Yadava Yashwant Kumar5Jain Pradeep Kumar6Gaikwad Kishore7Sirohi Anil8Division of Nematology, ICAR-Indian Agricultural Research Institute, Pusa Campus, New Delhi-110012, IndiaDivision of Nematology, ICAR-Indian Agricultural Research Institute, Pusa Campus, New Delhi-110012, IndiaDivision of Nematology, ICAR-Indian Agricultural Research Institute, Pusa Campus, New Delhi-110012, IndiaDivision of Nematology, ICAR-Indian Agricultural Research Institute, Pusa Campus, New Delhi-110012, IndiaDivision of Crop Protection, ICAR-Vivekananda Parvatiya Krishi Anusandhan Sansthan, Almora, Uttarakhand263601, IndiaICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, 110012, IndiaICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, 110012, IndiaICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, 110012, IndiaDivision of Nematology, ICAR-Indian Agricultural Research Institute, Pusa Campus, New Delhi-110012, IndiaAnguina tritici, the wheat seed gall nematode, causes the ‘ear-cockle’ or seed gall disease of wheat (Triticum sp.), leading to an extensive decline of yield (30–70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of A. tritici, which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing.https://doi.org/10.2478/jofnem-2024-0007anguina triticianhydrobiosisrna-seqtranscriptomewheat seed gall nematode |
| spellingShingle | Kumar Manish Neeraj Hada Alkesh Somvanshi Vishal Singh Singh Ashish Kumar Yadava Yashwant Kumar Jain Pradeep Kumar Gaikwad Kishore Sirohi Anil A Draft Transcriptome Announcement of Anguina tritici Journal of Nematology anguina tritici anhydrobiosis rna-seq transcriptome wheat seed gall nematode |
| title | A Draft Transcriptome Announcement of Anguina tritici |
| title_full | A Draft Transcriptome Announcement of Anguina tritici |
| title_fullStr | A Draft Transcriptome Announcement of Anguina tritici |
| title_full_unstemmed | A Draft Transcriptome Announcement of Anguina tritici |
| title_short | A Draft Transcriptome Announcement of Anguina tritici |
| title_sort | draft transcriptome announcement of anguina tritici |
| topic | anguina tritici anhydrobiosis rna-seq transcriptome wheat seed gall nematode |
| url | https://doi.org/10.2478/jofnem-2024-0007 |
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