Evolutionary Dynamics of Codon Usage Bias in Tomato Spotted Wilt Virus: Insights into Viral Adaptation and Host Interactions

Evolutionary Dynamics of Codon Usage Bias in Tomato Spotted Wilt Virus: Insights into Viral Adaptation and Host Interactions

Tomato spotted wilt virus (TSWV), belonging to the genus <i>Orthotospovirus</i>, is a significant pathogen through its infection of economically vital crops including tomato, tobacco, pepper, and other species worldwide. Given its substantial influence on the agricultural industry, in-de...

Full description

Saved in:

Bibliographic Details
Main Authors:	Haiting Zhao, Lang Qin, Xiaolong Deng, Stuart Reitz, Shengyong Wu, Zhen He
Format:	Article
Language:	English
Published:	MDPI AG 2025-06-01
Series:	Horticulturae
Subjects:	tomato spotted wilt virus natural selection mutational pressure codon usage pattern host adaptation
Online Access:	https://www.mdpi.com/2311-7524/11/7/721
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

RSCUcaller: an R package for analyzing differences in relative synonymous codon usage (RSCU)
by: Mateusz Maździarz, et al.
Published: (2025-05-01)

Comprehensive Analysis of Codon Usage Bias in Human Papillomavirus Type 51
by: Tan Xiaochun, et al.
Published: (2024-10-01)

Analysis of codon usage bias in the mitochondrial genome of Pleurozia purpurea
by: Mengxue DU, et al.
Published: (2025-02-01)

Comparative genomics of thermosynechococcaceae and thermostichaceae: insights into codon usage bias
by: Qiao-Hui Mou, et al.
Published: (2025-01-01)

Predicting viral host codon fitness and path shifting through tree-based learning on codon usage biases and genomic characteristics
by: Shuquan Su, et al.
Published: (2025-04-01)

Genome-wide analysis of the synonymous codon usage patterns in apple
by: Ning LI, et al.
Published: (2016-05-01)

Lost in translation: conserved amino acid usage despite extreme codon bias in foraminifera
by: Auden E. Cote-L'Heureux, et al.
Published: (2025-04-01)

Visualizing Tomato Spotted Wilt Virus Protein Localization: Cross-Kingdom Comparisons of Protein-Protein Interactions
by: K. M. Martin, et al.
Published: (2025-01-01)

Efficient translation initiation dictates codon usage at gene start
by: Kajetan Bentele, et al.
Published: (2013-06-01)

Insight into the codon usage patterns and adaptation of Tembusu Virus
by: Fucheng Guo, et al.
Published: (2025-01-01)

Complete chloroplast genomes of three Pleurozia species and comparative analyses with P. purpurea: codon usage bias and phylogeny
by: Sheng Bi, et al.
Published: (2025-07-01)

Prokaryotic expression of full coat protein gene of Tomato spotted wilt virus and development of Dot-blot ELISA method for this virus detection
by: YU Cui, et al.
Published: (2008-11-01)

Natural Selection Shaped Codon Usage Patterns in Wheat Dwarf Virus in Triticale
by: Jiuli Wang, et al.
Published: (2025-05-01)

Evolutionary dynamics of the calcium/cation antiporter superfamily in Brassicaceae: codon usage, selection pressure, and BnCaCAs role in abiotic stress response
by: Amin Abedi, et al.
Published: (2025-07-01)

Detection and Characterization of Tomato spotted wilt virus and Cucumber mosaic virus on Pepper Growing Areas in Antalya
by: Nihan Güneş, et al.
Published: (2019-09-01)

Comparison of MADS transcriptional factor on codon bias in arabidopsis and rice
by: LI Juan, et al.
Published: (2005-09-01)

Comparative Analysis of Codon Usage Patterns in the Chloroplast Genomes of <i>Fagopyrum</i> Species
by: Qilin Liu, et al.
Published: (2025-05-01)

Genetic and codon usage analyses reveal the evolution of the seoul virus
by: Yamei Wei, et al.
Published: (2025-06-01)

Deciphering Codon Usage Patterns in the Mitochondrial Genome of the <i>Oryza</i> Species
by: Yuyang Zhang, et al.
Published: (2024-11-01)

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
by: Cristina Pop, et al.
Published: (2014-12-01)

Comprehensive analysis of the codon usage patterns in the polyprotein coding sequences of the honeybee viruses
by: Yeşim Aktürk Dizman
Published: (2025-07-01)

Comprehensive Analysis of Chloroplast Genomes in Leguminous Forage Species: Codon Usage, Phylogenetic Relationships, and Evolutionary Insights
by: Rui Yang, et al.
Published: (2025-03-01)

A synergic and compatible microbial-based consortium for biocontrol of Fusarium wilt of tomato
by: Venkidusamy Kavi SIDHARTHAN, et al.
Published: (2023-07-01)

Characterization of the complete chloroplast genome and comparative analysis of the phylogeny and codon usage bias of three Yunnan wild rice species
by: Rongxin Li, et al.
Published: (2025-07-01)

Selection on synonymous codon usage in soybean (Glycine max) WRKY genes
by: Krishnendu Sinha, et al.
Published: (2024-11-01)

High-resolution genetic and physical mapping reveals a peanut spotted wilt disease resistance locus, PSWDR-1, to Tomato spotted wilt virus (TSWV), within a recombination cold-spot on chromosome A01
by: Dongliang Wu, et al.
Published: (2025-03-01)

A codon usage-based approach for the stratification of Influenza A across recent spillovers
by: Tommaso Alfonsi, et al.
Published: (2025-01-01)

Genetic diversity of tomato germplasm resources resistant to bacterial wilt (Ralstonia solanacearum) revealed by AFLP
by: ZHOU Guo-zhi, et al.
Published: (2009-07-01)

Scaled codon usage similarity index: A comprehensive resource for crop plants
by: Taniya Bargoti, et al.
Published: (2024-12-01)

Managing tomato bacterial wilt through pathogen suppression and host resistance augmentation using microbial peptide
by: Ishan Tiwari, et al.
Published: (2024-12-01)

Codon usage patterns and genomic variation analysis of chloroplast genomes provides new insights into the evolution of Aroideae
by: Xinbi Jia, et al.
Published: (2025-02-01)

Host and structure-specific codon usage of G genotype (VP7) among group A rotaviruses
by: Ziwei Liu, et al.
Published: (2024-11-01)

Target Spot of Tomato in Florida
by: Keevan MacKenzie, et al.
Published: (2019-11-01)

Target Spot of Tomato in Florida
by: Keevan MacKenzie, et al.
Published: (2019-11-01)

Target Spot of Tomato in Florida
by: Keevan MacKenzie, et al.
Published: (2019-11-01)

Tomato spotted wilt disease in Palestine
by: Dalya Masri, et al.
Published: (2021-12-01)

Deciphering codon usage patterns and evolutionary forces in chloroplast genes of Camellia sinensis var. assamica and Camellia sinensis var. sinensis in comparison to Camellia pubicosta
by: Sophiarani Yengkhom, et al.
Published: (2019-12-01)

Changes in the soil and rhizosphere microbiomes associated with bacterial wilt decline in the tomato monoculture field
by: Junwei Peng, et al.
Published: (2025-05-01)

Uncovering codon usage patterns during murine embryogenesis and tissue-specific developmental diseases
by: Sarah E. Fumagalli, et al.
Published: (2025-05-01)

Comparative Genomics Insights Into the Evolutionary Disparities Between Nitroplast‐Evolved Ecotype UCYN‐A2 and Its Closest Relative UCYN‐A1
by: Shiyun Han, et al.
Published: (2025-07-01)