SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support
The SlicerBatchBrainMRTumorSegmentation is a graphical user interface (GUI) based Python scripted module within 3D Slicer. Its purpose is to perform automated brain tumour segmentation for numerous patients while preserving data integrity and organization. Through automation, manual intervention at...
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| Format: | Article |
| Language: | English |
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Elsevier
2024-12-01
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| Series: | SoftwareX |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352711024003364 |
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| author | Saima Safdar Nathaniel Barry Michael Bynevelt Suki Gill Pejman Rowshan Farzad Martin A Ebert |
| author_facet | Saima Safdar Nathaniel Barry Michael Bynevelt Suki Gill Pejman Rowshan Farzad Martin A Ebert |
| author_sort | Saima Safdar |
| collection | DOAJ |
| description | The SlicerBatchBrainMRTumorSegmentation is a graphical user interface (GUI) based Python scripted module within 3D Slicer. Its purpose is to perform automated brain tumour segmentation for numerous patients while preserving data integrity and organization. Through automation, manual intervention at each stage of the Brain Tumor Segmentation (BraTS) toolkit becomes unnecessary, resulting in efficient processing of multiple patient cases. Being an open-source software implementation, the SlicerBatchBrainMRTumorSegmentation is licensed under the BSD (Berkeley Source Distribution) 3-Clause License, facilitating its use by the broader research community. This tool empowers users to explore diverse segmentation approaches, fosters research advancements, and stimulates innovation in the field of brain tumour analysis. |
| format | Article |
| id | doaj-art-c16d27f14319480b89af24340688c09d |
| institution | Kabale University |
| issn | 2352-7110 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | SoftwareX |
| spelling | doaj-art-c16d27f14319480b89af24340688c09d2024-11-29T06:24:16ZengElsevierSoftwareX2352-71102024-12-0128101966SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research supportSaima Safdar0Nathaniel Barry1Michael Bynevelt2Suki Gill3Pejman Rowshan Farzad4Martin A Ebert5The University of Western Australia, 35 Stirling Hwy, Crawley WA 6009; Corresponding author.The University of Western Australia, 35 Stirling Hwy, Crawley WA 6009Neurological Intervention & Imaging service WA, Sir Charles Gairdner Hospital, Hospital Ave, Nedlands WA 6009Radiation Oncology, Sir Charles Gairdner Hospital, Hospital Ave, Nedlands WA 6009The University of Western Australia, 35 Stirling Hwy, Crawley WA 6009The University of Western Australia, 35 Stirling Hwy, Crawley WA 6009; Radiation Oncology, Sir Charles Gairdner Hospital, Hospital Ave, Nedlands WA 6009The SlicerBatchBrainMRTumorSegmentation is a graphical user interface (GUI) based Python scripted module within 3D Slicer. Its purpose is to perform automated brain tumour segmentation for numerous patients while preserving data integrity and organization. Through automation, manual intervention at each stage of the Brain Tumor Segmentation (BraTS) toolkit becomes unnecessary, resulting in efficient processing of multiple patient cases. Being an open-source software implementation, the SlicerBatchBrainMRTumorSegmentation is licensed under the BSD (Berkeley Source Distribution) 3-Clause License, facilitating its use by the broader research community. This tool empowers users to explore diverse segmentation approaches, fosters research advancements, and stimulates innovation in the field of brain tumour analysis.http://www.sciencedirect.com/science/article/pii/S23527110240033643D slicerImage analysisSegmentationNeural networksGUIBraTS-Toolkit |
| spellingShingle | Saima Safdar Nathaniel Barry Michael Bynevelt Suki Gill Pejman Rowshan Farzad Martin A Ebert SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support SoftwareX 3D slicer Image analysis Segmentation Neural networks GUI BraTS-Toolkit |
| title | SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support |
| title_full | SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support |
| title_fullStr | SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support |
| title_full_unstemmed | SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support |
| title_short | SlicerBatchBrainMRTumorSegmentation: Automating brain tumor segmentation in 3D slicer for improved efficiency and research support |
| title_sort | slicerbatchbrainmrtumorsegmentation automating brain tumor segmentation in 3d slicer for improved efficiency and research support |
| topic | 3D slicer Image analysis Segmentation Neural networks GUI BraTS-Toolkit |
| url | http://www.sciencedirect.com/science/article/pii/S2352711024003364 |
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