Unraveling the impact of genome assembly on bacterial typing: a one health perspective

Unraveling the impact of genome assembly on bacterial typing: a one health perspective

Abstract Background In the context of pathogen surveillance, it is crucial to ensure interoperability and harmonized data. Several surveillance systems are designed to compare bacteria and identify outbreak clusters based on core genome MultiLocus Sequence Typing (cgMLST). Among the different approa...

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Main Authors: Déborah Merda, Meryl Vila-Nova, Mathilde Bonis, Anne-Laure Boutigny, Thomas Brauge, Marina Cavaiuolo, Amandine Cunty, Antoine Regnier, Maroua Sayeb, Noémie Vingadassalon, Claire Yvon, Virginie Chesnais
Format: Article
Language:English
Published: BMC 2024-11-01
Series:BMC Genomics
Subjects:
cgMLST
Genome assembly
Bioinformatics tool variability
Data comparability
Online Access:https://doi.org/10.1186/s12864-024-10982-z
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