Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae)
In this study, we report the chloroplast (cp) genome of Dendrobium hainanense. The cp genome was 151,367 bp in length; the overall CG content of the genome was 37.46%. The length of the large single-copy (LSC) region was 83,938 bp, and 15,829 bp in a small single-copy (SSC) region, and a pair of inv...
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Taylor & Francis Group
2024-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2435899 |
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| author | Lei Zhao Peizhang Chen Wenchang Li Zhe Zhang |
| author_facet | Lei Zhao Peizhang Chen Wenchang Li Zhe Zhang |
| author_sort | Lei Zhao |
| collection | DOAJ |
| description | In this study, we report the chloroplast (cp) genome of Dendrobium hainanense. The cp genome was 151,367 bp in length; the overall CG content of the genome was 37.46%. The length of the large single-copy (LSC) region was 83,938 bp, and 15,829 bp in a small single-copy (SSC) region, and a pair of inverted repeats (IRs) of 12,900 bp. One hundred and twenty-seven genes were predicted, including 81 protein-coding genes, 38 genes for tRNA, and eight genes for rRNA. The results of phylogenetic tree showed that Dendrobium hainanense had the closest genetic relationship with Dendrobium parciflorum. This study will be help to understand the genetic diversity of Dendrobium. |
| format | Article |
| id | doaj-art-bafe2c78e9a44ccf81db2f75f945f93e |
| institution | Kabale University |
| issn | 2380-2359 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj-art-bafe2c78e9a44ccf81db2f75f945f93e2024-12-16T05:11:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592024-12-019121679168210.1080/23802359.2024.2435899Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae)Lei Zhao0Peizhang Chen1Wenchang Li2Zhe Zhang3Hainan Smart Rainforest Center, Haikou, ChinaKey Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants (Hainan University), Ministry of Education, Hainan University, Haikou, ChinaKey Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants (Hainan University), Ministry of Education, Hainan University, Haikou, ChinaKey Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants (Hainan University), Ministry of Education, Hainan University, Haikou, ChinaIn this study, we report the chloroplast (cp) genome of Dendrobium hainanense. The cp genome was 151,367 bp in length; the overall CG content of the genome was 37.46%. The length of the large single-copy (LSC) region was 83,938 bp, and 15,829 bp in a small single-copy (SSC) region, and a pair of inverted repeats (IRs) of 12,900 bp. One hundred and twenty-seven genes were predicted, including 81 protein-coding genes, 38 genes for tRNA, and eight genes for rRNA. The results of phylogenetic tree showed that Dendrobium hainanense had the closest genetic relationship with Dendrobium parciflorum. This study will be help to understand the genetic diversity of Dendrobium.https://www.tandfonline.com/doi/10.1080/23802359.2024.2435899Dendrobium hainanensecomplete chloroplast genomenext-generation sequencingOrchidaceae |
| spellingShingle | Lei Zhao Peizhang Chen Wenchang Li Zhe Zhang Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae) Mitochondrial DNA. Part B. Resources Dendrobium hainanense complete chloroplast genome next-generation sequencing Orchidaceae |
| title | Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae) |
| title_full | Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae) |
| title_fullStr | Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae) |
| title_full_unstemmed | Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae) |
| title_short | Characterization and phylogenetic analysis of the complete chloroplast genome sequence of Dendrobium hainanense (Orchidaceae) |
| title_sort | characterization and phylogenetic analysis of the complete chloroplast genome sequence of dendrobium hainanense orchidaceae |
| topic | Dendrobium hainanense complete chloroplast genome next-generation sequencing Orchidaceae |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2435899 |
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