Programming scheduled self-assembly of circadian materials

Abstract Active biological molecules present a powerful, yet largely untapped, opportunity to impart autonomous regulation of materials. Because these systems can function robustly to regulate when and where chemical reactions occur, they have the ability to bring complex, life-like behavior to synt...

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Main Authors: Gregor Leech, Lauren Melcher, Michelle Chiu, Maya Nugent, Shirlaine Juliano, Lily Burton, Janet Kang, Soo Ji Kim, Sourav Roy, Leila Farhadi, Jennifer L. Ross, Moumita Das, Michael J. Rust, Rae M. Robertson-Anderson
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-024-55645-5
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author Gregor Leech
Lauren Melcher
Michelle Chiu
Maya Nugent
Shirlaine Juliano
Lily Burton
Janet Kang
Soo Ji Kim
Sourav Roy
Leila Farhadi
Jennifer L. Ross
Moumita Das
Michael J. Rust
Rae M. Robertson-Anderson
author_facet Gregor Leech
Lauren Melcher
Michelle Chiu
Maya Nugent
Shirlaine Juliano
Lily Burton
Janet Kang
Soo Ji Kim
Sourav Roy
Leila Farhadi
Jennifer L. Ross
Moumita Das
Michael J. Rust
Rae M. Robertson-Anderson
author_sort Gregor Leech
collection DOAJ
description Abstract Active biological molecules present a powerful, yet largely untapped, opportunity to impart autonomous regulation of materials. Because these systems can function robustly to regulate when and where chemical reactions occur, they have the ability to bring complex, life-like behavior to synthetic materials. Here, we achieve this design feat by using functionalized circadian clock proteins, KaiB and KaiC, to engineer time-dependent crosslinking of colloids. The resulting material self-assembles with programmable kinetics, producing macroscopic changes in material properties, via molecular assembly of KaiB-KaiC complexes. We show that colloid crosslinking depends strictly on the phosphorylation state of KaiC, with kinetics that are synced with KaiB-KaiC complexing. Our microscopic image analyses and computational models indicate that the stability of colloidal super-structures depends sensitively on the number of Kai complexes per colloid connection. Consistent with our model predictions, a high concentration stabilizes the material against dissolution after a robust self-assembly phase, while a low concentration allows for oscillatory material structure. This work introduces the concept of harnessing biological timers to control synthetic materials; and, more generally, opens the door to using protein-based reaction networks to endow synthetic systems with life-like functional properties.
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spelling doaj-art-ba388a856c0c46a9a021c4ad2e90d62c2025-01-05T12:39:35ZengNature PortfolioNature Communications2041-17232025-01-0116111210.1038/s41467-024-55645-5Programming scheduled self-assembly of circadian materialsGregor Leech0Lauren Melcher1Michelle Chiu2Maya Nugent3Shirlaine Juliano4Lily Burton5Janet Kang6Soo Ji Kim7Sourav Roy8Leila Farhadi9Jennifer L. Ross10Moumita Das11Michael J. Rust12Rae M. Robertson-Anderson13Department of Physics and Biophysics, University of San DiegoSchool of Mathematical Sciences, Rochester Institute of TechnologyGraduate Program in Biophysical Sciences, University of ChicagoDepartment of Physics and Biophysics, University of San DiegoDepartment of Physics and Biophysics, University of San DiegoDepartment of Biochemistry and Molecular Biophysics, University of ChicagoDepartment of Molecular Genetics and Cell Biology and Department of Physics, University of ChicagoDepartment of Biochemistry and Molecular Biophysics, University of ChicagoDepartment of Physics, Syracuse UniversityDepartment of Physics, Syracuse UniversityDepartment of Physics, Syracuse UniversitySchool of Mathematical Sciences, Rochester Institute of TechnologyDepartment of Molecular Genetics and Cell Biology and Department of Physics, University of ChicagoDepartment of Physics and Biophysics, University of San DiegoAbstract Active biological molecules present a powerful, yet largely untapped, opportunity to impart autonomous regulation of materials. Because these systems can function robustly to regulate when and where chemical reactions occur, they have the ability to bring complex, life-like behavior to synthetic materials. Here, we achieve this design feat by using functionalized circadian clock proteins, KaiB and KaiC, to engineer time-dependent crosslinking of colloids. The resulting material self-assembles with programmable kinetics, producing macroscopic changes in material properties, via molecular assembly of KaiB-KaiC complexes. We show that colloid crosslinking depends strictly on the phosphorylation state of KaiC, with kinetics that are synced with KaiB-KaiC complexing. Our microscopic image analyses and computational models indicate that the stability of colloidal super-structures depends sensitively on the number of Kai complexes per colloid connection. Consistent with our model predictions, a high concentration stabilizes the material against dissolution after a robust self-assembly phase, while a low concentration allows for oscillatory material structure. This work introduces the concept of harnessing biological timers to control synthetic materials; and, more generally, opens the door to using protein-based reaction networks to endow synthetic systems with life-like functional properties.https://doi.org/10.1038/s41467-024-55645-5
spellingShingle Gregor Leech
Lauren Melcher
Michelle Chiu
Maya Nugent
Shirlaine Juliano
Lily Burton
Janet Kang
Soo Ji Kim
Sourav Roy
Leila Farhadi
Jennifer L. Ross
Moumita Das
Michael J. Rust
Rae M. Robertson-Anderson
Programming scheduled self-assembly of circadian materials
Nature Communications
title Programming scheduled self-assembly of circadian materials
title_full Programming scheduled self-assembly of circadian materials
title_fullStr Programming scheduled self-assembly of circadian materials
title_full_unstemmed Programming scheduled self-assembly of circadian materials
title_short Programming scheduled self-assembly of circadian materials
title_sort programming scheduled self assembly of circadian materials
url https://doi.org/10.1038/s41467-024-55645-5
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