ChromatinHD connects single-cell DNA accessibility and conformation to gene expression through scale-adaptive machine learning

Abstract Gene regulation is inherently multiscale, but scale-adaptive machine learning methods that fully exploit this property in single-nucleus accessibility data are still lacking. Here, we develop ChromatinHD, a pair of scale-adaptive models that uses the raw accessibility data, without peak-cal...

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Bibliographic Details
Main Authors: Wouter Saelens, Olga Pushkarev, Bart Deplancke
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-024-55447-9
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