Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary

Background & Aims: Hepatitis B virus (HBV)-DNA integration into the host genome contributes to hepatocellular carcinoma (HCC) development. KMT2B is the second most frequent locus of HBV-DNA integration in HCC; however, its role and function remain unclear. We aimed to clarify the impact of H...

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Main Authors: Jun Tsuchiya, Masato Miyoshi, Sei Kakinuma, Fukiko Kawai-Kitahata, Akihide Kamiya, Taro Shimizu, Ayako Sato, Keiya Watakabe, Tomohiro Mochida, Kento Inada, Rion Kamimae, Shun Kaneko, Miyako Murakawa, Sayuri Nitta, Mina Nakagawa, Mamoru Watanabe, Yasuhiro Asahina, Ryuichi Okamoto
Format: Article
Language:English
Published: Elsevier 2025-01-01
Series:Cellular and Molecular Gastroenterology and Hepatology
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Online Access:http://www.sciencedirect.com/science/article/pii/S2352345X24001772
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author Jun Tsuchiya
Masato Miyoshi
Sei Kakinuma
Fukiko Kawai-Kitahata
Akihide Kamiya
Taro Shimizu
Ayako Sato
Keiya Watakabe
Tomohiro Mochida
Kento Inada
Rion Kamimae
Shun Kaneko
Miyako Murakawa
Sayuri Nitta
Mina Nakagawa
Mamoru Watanabe
Yasuhiro Asahina
Ryuichi Okamoto
author_facet Jun Tsuchiya
Masato Miyoshi
Sei Kakinuma
Fukiko Kawai-Kitahata
Akihide Kamiya
Taro Shimizu
Ayako Sato
Keiya Watakabe
Tomohiro Mochida
Kento Inada
Rion Kamimae
Shun Kaneko
Miyako Murakawa
Sayuri Nitta
Mina Nakagawa
Mamoru Watanabe
Yasuhiro Asahina
Ryuichi Okamoto
author_sort Jun Tsuchiya
collection DOAJ
description Background & Aims: Hepatitis B virus (HBV)-DNA integration into the host genome contributes to hepatocellular carcinoma (HCC) development. KMT2B is the second most frequent locus of HBV-DNA integration in HCC; however, its role and function remain unclear. We aimed to clarify the impact of HBV-KMT2B integration in HCC development using a human genome-edited induced pluripotent stem cell (iPSCs) model. Methods: Based on the genetic information on HBV-KMT2B integration in HCC, we determined its complete DNA sequence and transcript variants. To exclude the effect of other oncogenic mutations, we reproduced HBV integration in healthy donor iPSCs with an intact genome and analyzed its effects using iPSC-derived hepatic progenitor cells (HPCs) and hepatocytes (iPS-Heps). Results: The reproduced HBV-KMT2B integration significantly upregulated the proliferation of hepatic cells. Comprehensive transcriptional and epigenetic analyses revealed enhanced expression of cell cycle-related genes in hepatic cells with HBV-KMT2B integration based on perturbation of histone 3 lysine 4 tri-methylation (H3K4me3), mimicking that in the original HCC sample. Long-read RNA-sequence detected the common KMT2B transcript variants in the HCC sample and HPCs. Overexpression of the truncated variant significantly enhanced proliferation of hepatic cells, whereas HBV-KMT2B fusion transcripts did not enhance proliferation. HBV-KMT2B-integrated HPCs exhibited replication stress and DNA damage, indicating that our model initiated the process of hepatocarcinogenesis due to abnormally promoted KMT2B function. Conclusions: Our disease model using genetically engineered iPSCs provides the first insight into both the KMT2B function in HCC development and the oncogenic processes by HBV-KMT2B integration. We clarified the novel oncogenic mechanism in HBV-related HCC due to aberrant KMT2B function.
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spelling doaj-art-a471b682b3ab4b5b919e70619ee207fe2025-01-17T04:49:35ZengElsevierCellular and Molecular Gastroenterology and Hepatology2352-345X2025-01-01192101422Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummaryJun Tsuchiya0Masato Miyoshi1Sei Kakinuma2Fukiko Kawai-Kitahata3Akihide Kamiya4Taro Shimizu5Ayako Sato6Keiya Watakabe7Tomohiro Mochida8Kento Inada9Rion Kamimae10Shun Kaneko11Miyako Murakawa12Sayuri Nitta13Mina Nakagawa14Mamoru Watanabe15Yasuhiro Asahina16Ryuichi Okamoto17Department of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, Japan; Department of Clinical and Diagnostic Laboratory Science, Institute of Science Tokyo (Science Tokyo), Tokyo, Japan; Correspondence Address correspondence to: Sei Kakinuma, MD, PhD, Institute of Science Tokyo, Department of Clinical and Diagnostic Laboratory Science, 1-5-45 Yushima, Bunkyo-ku, Tokyo, 1138519 Japan.Department of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Molecular Life Sciences, School of Medicine, Tokai University, Kanagawa, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Clinical and Diagnostic Laboratory Science, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, Japan; Faculty of Medicine, Juntendo University, Tokyo, JapanDepartment of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, Japan; Division of Hepatic Medical Science, Institute of Science Tokyo (Science Tokyo), Tokyo, Japan; Yasuhiro Asahina, MD, PhD, Institute of Science Tokyo, Department of Gastroenterology and Hepatology, 1-5-45 Yushima, Bunkyo-ku, Tokyo, 1138519 Japan.Department of Gastroenterology and Hepatology, Institute of Science Tokyo (Science Tokyo), Tokyo, Japan; Ryuichi Okamoto, MD, PhD, Institute of Science Tokyo, Department of Gastroenterology and Hepatology, 1-5-45 Yushima, Bunkyo-ku, Tokyo, 1138519 Japan.Background & Aims: Hepatitis B virus (HBV)-DNA integration into the host genome contributes to hepatocellular carcinoma (HCC) development. KMT2B is the second most frequent locus of HBV-DNA integration in HCC; however, its role and function remain unclear. We aimed to clarify the impact of HBV-KMT2B integration in HCC development using a human genome-edited induced pluripotent stem cell (iPSCs) model. Methods: Based on the genetic information on HBV-KMT2B integration in HCC, we determined its complete DNA sequence and transcript variants. To exclude the effect of other oncogenic mutations, we reproduced HBV integration in healthy donor iPSCs with an intact genome and analyzed its effects using iPSC-derived hepatic progenitor cells (HPCs) and hepatocytes (iPS-Heps). Results: The reproduced HBV-KMT2B integration significantly upregulated the proliferation of hepatic cells. Comprehensive transcriptional and epigenetic analyses revealed enhanced expression of cell cycle-related genes in hepatic cells with HBV-KMT2B integration based on perturbation of histone 3 lysine 4 tri-methylation (H3K4me3), mimicking that in the original HCC sample. Long-read RNA-sequence detected the common KMT2B transcript variants in the HCC sample and HPCs. Overexpression of the truncated variant significantly enhanced proliferation of hepatic cells, whereas HBV-KMT2B fusion transcripts did not enhance proliferation. HBV-KMT2B-integrated HPCs exhibited replication stress and DNA damage, indicating that our model initiated the process of hepatocarcinogenesis due to abnormally promoted KMT2B function. Conclusions: Our disease model using genetically engineered iPSCs provides the first insight into both the KMT2B function in HCC development and the oncogenic processes by HBV-KMT2B integration. We clarified the novel oncogenic mechanism in HBV-related HCC due to aberrant KMT2B function.http://www.sciencedirect.com/science/article/pii/S2352345X24001772H3K4me3Hepatitis B Virus (HBV) Genome IntegrationHepatocellular Carcinomainduced Pluripotent Stem Cells (iPSCs)Replication Stress
spellingShingle Jun Tsuchiya
Masato Miyoshi
Sei Kakinuma
Fukiko Kawai-Kitahata
Akihide Kamiya
Taro Shimizu
Ayako Sato
Keiya Watakabe
Tomohiro Mochida
Kento Inada
Rion Kamimae
Shun Kaneko
Miyako Murakawa
Sayuri Nitta
Mina Nakagawa
Mamoru Watanabe
Yasuhiro Asahina
Ryuichi Okamoto
Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary
Cellular and Molecular Gastroenterology and Hepatology
H3K4me3
Hepatitis B Virus (HBV) Genome Integration
Hepatocellular Carcinoma
induced Pluripotent Stem Cells (iPSCs)
Replication Stress
title Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary
title_full Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary
title_fullStr Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary
title_full_unstemmed Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary
title_short Hepatitis B Virus-KMT2B Integration Drives Hepatic Oncogenic Processes in a Human Gene-edited Induced Pluripotent Stem Cells-derived ModelSummary
title_sort hepatitis b virus kmt2b integration drives hepatic oncogenic processes in a human gene edited induced pluripotent stem cells derived modelsummary
topic H3K4me3
Hepatitis B Virus (HBV) Genome Integration
Hepatocellular Carcinoma
induced Pluripotent Stem Cells (iPSCs)
Replication Stress
url http://www.sciencedirect.com/science/article/pii/S2352345X24001772
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