Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea
<i>Chlamys farreri</i> is primarily cultivated in Japan, China, and South Korea. Although mass mortality of scallops has been occurring recently, likely caused by high temperatures or infectious diseases, the underlying cause remains unclear. Little is known regarding the viral diseases...
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2024-10-01
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| author | Ji Woo Shin Kang Eun Kim Joon Sang Park Min-Jeong Kim Taek-Kyun Lee Yu Jin Kim Hyun-Jung Kim Seon Min Kim Seung Won Jung |
| author_facet | Ji Woo Shin Kang Eun Kim Joon Sang Park Min-Jeong Kim Taek-Kyun Lee Yu Jin Kim Hyun-Jung Kim Seon Min Kim Seung Won Jung |
| author_sort | Ji Woo Shin |
| collection | DOAJ |
| description | <i>Chlamys farreri</i> is primarily cultivated in Japan, China, and South Korea. Although mass mortality of scallops has been occurring recently, likely caused by high temperatures or infectious diseases, the underlying cause remains unclear. Little is known regarding the viral diseases affecting them. Therefore, we explored DNA virus diversity in the mid-gut gland of <i>C. farreri</i> and compared it with that of seawater. <i>C. farreri</i> was cultivated at depths below 5 m from the sea surface in the coastal waters of South Korea and sampled from May to August 2018. Different DNA viral communities were observed in both <i>C. farreri</i> and seawater. In <i>C. farreri</i>, prevalent groups included <i>Mimiviridae</i> (7%), <i>Poxviridae</i> (6%), and <i>Phycodnaviridae</i> (5%). Conversely, the dominant groups in seawater were <i>Autographiviridae</i> (20%), <i>Kyanoviridae</i> (12%), and <i>Zobellviridae</i> (10%). We identified <i>C. farreri</i>-specific viral communities and potentially infectious viruses, such as <i>Ostreid herpesvirus 1</i> and Abalone herpesvirus Victoria/AUS/2009. Furthermore, <i>C. farreri</i> acts as a reservoir for various viruses, which impact microbial community dynamics and disease transmission in marine ecosystems. Understanding these viral communities is crucial to protecting and restoring coastal ecosystems by highlighting their role in the transmission of potential avian- and bivalve-specific viruses. |
| format | Article |
| id | doaj-art-95ef1e18b3864ff183d44401db6979ee |
| institution | Kabale University |
| issn | 2076-0817 |
| language | English |
| publishDate | 2024-10-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Pathogens |
| spelling | doaj-art-95ef1e18b3864ff183d44401db6979ee2024-11-26T18:16:42ZengMDPI AGPathogens2076-08172024-10-01131193510.3390/pathogens13110935Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of KoreaJi Woo Shin0Kang Eun Kim1Joon Sang Park2Min-Jeong Kim3Taek-Kyun Lee4Yu Jin Kim5Hyun-Jung Kim6Seon Min Kim7Seung Won Jung8Library of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaRisk Assessment Research Center, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of KoreaLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje 53201, Republic of Korea<i>Chlamys farreri</i> is primarily cultivated in Japan, China, and South Korea. Although mass mortality of scallops has been occurring recently, likely caused by high temperatures or infectious diseases, the underlying cause remains unclear. Little is known regarding the viral diseases affecting them. Therefore, we explored DNA virus diversity in the mid-gut gland of <i>C. farreri</i> and compared it with that of seawater. <i>C. farreri</i> was cultivated at depths below 5 m from the sea surface in the coastal waters of South Korea and sampled from May to August 2018. Different DNA viral communities were observed in both <i>C. farreri</i> and seawater. In <i>C. farreri</i>, prevalent groups included <i>Mimiviridae</i> (7%), <i>Poxviridae</i> (6%), and <i>Phycodnaviridae</i> (5%). Conversely, the dominant groups in seawater were <i>Autographiviridae</i> (20%), <i>Kyanoviridae</i> (12%), and <i>Zobellviridae</i> (10%). We identified <i>C. farreri</i>-specific viral communities and potentially infectious viruses, such as <i>Ostreid herpesvirus 1</i> and Abalone herpesvirus Victoria/AUS/2009. Furthermore, <i>C. farreri</i> acts as a reservoir for various viruses, which impact microbial community dynamics and disease transmission in marine ecosystems. Understanding these viral communities is crucial to protecting and restoring coastal ecosystems by highlighting their role in the transmission of potential avian- and bivalve-specific viruses.https://www.mdpi.com/2076-0817/13/11/935aquaculture<i>Chlamys farreri</i>DNA viromeherpesvirus<i>Ostreid herpesvirus 1</i>viral diversity |
| spellingShingle | Ji Woo Shin Kang Eun Kim Joon Sang Park Min-Jeong Kim Taek-Kyun Lee Yu Jin Kim Hyun-Jung Kim Seon Min Kim Seung Won Jung Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea Pathogens aquaculture <i>Chlamys farreri</i> DNA virome herpesvirus <i>Ostreid herpesvirus 1</i> viral diversity |
| title | Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea |
| title_full | Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea |
| title_fullStr | Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea |
| title_full_unstemmed | Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea |
| title_short | Metavirome Insights into the Diversity and Potential Pathogenic Infection of <i>Chlamys farreri</i> in the Coastal Seas of the Republic of Korea |
| title_sort | metavirome insights into the diversity and potential pathogenic infection of i chlamys farreri i in the coastal seas of the republic of korea |
| topic | aquaculture <i>Chlamys farreri</i> DNA virome herpesvirus <i>Ostreid herpesvirus 1</i> viral diversity |
| url | https://www.mdpi.com/2076-0817/13/11/935 |
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