Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae)
Abstract Liposcelis tricolor (Psocoptera: Liposcelididae) is a significant pest affecting stored products globally. However, due to the lack of a detailed genomic reference, the mechanisms of sex determination, stress resistance, and potential control methods for this booklouse remain poorly underst...
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Nature Portfolio
2024-12-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-024-04179-y |
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| author | Shi-Die Jiang Yu-Ang Chen Sheng-Yuan Sun Guy Smagghe Jin-Jun Wang Dan-Dan Wei |
| author_facet | Shi-Die Jiang Yu-Ang Chen Sheng-Yuan Sun Guy Smagghe Jin-Jun Wang Dan-Dan Wei |
| author_sort | Shi-Die Jiang |
| collection | DOAJ |
| description | Abstract Liposcelis tricolor (Psocoptera: Liposcelididae) is a significant pest affecting stored products globally. However, due to the lack of a detailed genomic reference, the mechanisms of sex determination, stress resistance, and potential control methods for this booklouse remain poorly understood. In this study, the chromosome-level genome of L. tricolor was assembled by employing Illumina, Nanopore, and Hi-C sequencing technologies. The final genome size was determined to be 229.33 Mb, anchored to 9 pseudo-chromosomes. BUSCO analysis showed that 99.2% of complete BUSCOs were identified, suggesting the high completeness of the genome. A total of 91.49 Mb of repetitive sequences, accounting for 38.84% of the total genome, were annotated, and 15,647 protein-coding genes were predicted, with 88.17% functionally annotated. Additionally, we identified 25 typical sex-determining genes based on the genomic data. This high-quality genome assembly provides a crucial foundation for advancing our comprehension of the molecular biology, genetics, and potential control strategies for psocid L. tricolor. |
| format | Article |
| id | doaj-art-95d6e93dfacf48a1a26d8906fa80f854 |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-95d6e93dfacf48a1a26d8906fa80f8542024-12-08T12:18:04ZengNature PortfolioScientific Data2052-44632024-12-011111810.1038/s41597-024-04179-yChromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae)Shi-Die Jiang0Yu-Ang Chen1Sheng-Yuan Sun2Guy Smagghe3Jin-Jun Wang4Dan-Dan Wei5Key Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest UniversityKey Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest UniversityKey Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest UniversityDepartment of Plants and Crops, Ghent UniversityKey Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest UniversityKey Laboratory of Entomology and Pest Control Engineering, College of Plant Protection, Southwest UniversityAbstract Liposcelis tricolor (Psocoptera: Liposcelididae) is a significant pest affecting stored products globally. However, due to the lack of a detailed genomic reference, the mechanisms of sex determination, stress resistance, and potential control methods for this booklouse remain poorly understood. In this study, the chromosome-level genome of L. tricolor was assembled by employing Illumina, Nanopore, and Hi-C sequencing technologies. The final genome size was determined to be 229.33 Mb, anchored to 9 pseudo-chromosomes. BUSCO analysis showed that 99.2% of complete BUSCOs were identified, suggesting the high completeness of the genome. A total of 91.49 Mb of repetitive sequences, accounting for 38.84% of the total genome, were annotated, and 15,647 protein-coding genes were predicted, with 88.17% functionally annotated. Additionally, we identified 25 typical sex-determining genes based on the genomic data. This high-quality genome assembly provides a crucial foundation for advancing our comprehension of the molecular biology, genetics, and potential control strategies for psocid L. tricolor.https://doi.org/10.1038/s41597-024-04179-y |
| spellingShingle | Shi-Die Jiang Yu-Ang Chen Sheng-Yuan Sun Guy Smagghe Jin-Jun Wang Dan-Dan Wei Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae) Scientific Data |
| title | Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae) |
| title_full | Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae) |
| title_fullStr | Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae) |
| title_full_unstemmed | Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae) |
| title_short | Chromosome-level genome assembly of a stored-product psocid, Liposcelis tricolor (Psocodea: Liposcelididae) |
| title_sort | chromosome level genome assembly of a stored product psocid liposcelis tricolor psocodea liposcelididae |
| url | https://doi.org/10.1038/s41597-024-04179-y |
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