SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression

HLA-E expression plays a central role for modulation of NK cell function by interaction with inhibitory NKG2A and stimulatory NKG2C receptors on canonical and adaptive NK cells, respectively. Here, we demonstrate that infection of human primary lung tissue with SARS-CoV-2 leads to increased HLA-E ex...

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Main Authors: Mohammad Zahidul Hasan, Maren Claus, Nadine Krüger, Sarah Reusing, Eline Gall, Christina Bade-Döding, Armin Braun, Carsten Watzl, Markus Uhrberg, Lutz Walter
Format: Article
Language:English
Published: Taylor & Francis Group 2024-12-01
Series:Emerging Microbes and Infections
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Online Access:https://www.tandfonline.com/doi/10.1080/22221751.2024.2361019
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author Mohammad Zahidul Hasan
Maren Claus
Nadine Krüger
Sarah Reusing
Eline Gall
Christina Bade-Döding
Armin Braun
Carsten Watzl
Markus Uhrberg
Lutz Walter
author_facet Mohammad Zahidul Hasan
Maren Claus
Nadine Krüger
Sarah Reusing
Eline Gall
Christina Bade-Döding
Armin Braun
Carsten Watzl
Markus Uhrberg
Lutz Walter
author_sort Mohammad Zahidul Hasan
collection DOAJ
description HLA-E expression plays a central role for modulation of NK cell function by interaction with inhibitory NKG2A and stimulatory NKG2C receptors on canonical and adaptive NK cells, respectively. Here, we demonstrate that infection of human primary lung tissue with SARS-CoV-2 leads to increased HLA-E expression and show that processing of the peptide YLQPRTFLL from the spike protein is primarily responsible for the strong, dose-dependent increase of HLA-E. Targeting the peptide site within the spike protein revealed that a single point mutation was sufficient to abrogate the increase in HLA-E expression. Spike-mediated induction of HLA-E differentially affected NK cell function: whereas degranulation, IFN-γ production, and target cell cytotoxicity were enhanced in NKG2C+ adaptive NK cells, effector functions were inhibited in NKG2A+ canonical NK cells. Analysis of a cohort of COVID-19 patients in the acute phase of infection revealed that adaptive NK cells were induced irrespective of the HCMV status, challenging the paradigm that adaptive NK cells are only generated during HCMV infection. During the first week of hospitalization, patients exhibited a selective increase of early NKG2C+CD57− adaptive NK cells whereas mature NKG2C+CD57+ cells remained unchanged. Further analysis of recovered patients suggested that the adaptive NK cell response is primarily driven by a wave of early adaptive NK cells during acute infection that wanes once the infection is cleared. Together, this study suggests that NK cell responses to SARS-CoV-2 infection are majorly influenced by the balance between canonical and adaptive NK cells via the HLA-E/NKG2A/C axis.
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spelling doaj-art-922fdbe1e53a41a29cccf93946fdf8012024-12-07T04:40:17ZengTaylor & Francis GroupEmerging Microbes and Infections2222-17512024-12-0113110.1080/22221751.2024.2361019SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expressionMohammad Zahidul Hasan0Maren Claus1Nadine Krüger2Sarah Reusing3Eline Gall4Christina Bade-Döding5Armin Braun6Carsten Watzl7Markus Uhrberg8Lutz Walter9Primate Genetics Laboratory, German Primate Center, Leibniz-Institute for Primate Research, Göttingen, GermanyDepartment for Immunology, Leibniz Research Centre for Working Environment and Human Factors (IfADo) at TU Dortmund, Dortmund, GermanyPlatform Infection Models, German Primate Center, Leibniz-Institute for Primate Research, Göttingen, GermanyInstitute for Transplantation Diagnostics and Cell Therapeutics, Medical Faculty and University Hospital Düsseldorf, Heinrich-Heine University Düsseldorf, Düsseldorf, GermanyInstitute for Transfusion Medicine, Hannover Medical School, Hannover, GermanyInstitute for Transfusion Medicine, Hannover Medical School, Hannover, GermanyFraunhofer Institute for Toxicology and Experimental Medicine, Member of the German Center for Lung Research (DZL), Biomedical Research in Endstage and Obstructive Lung Disease (BREATH), Fraunhofer Cluster of Excellence Immune-Mediated Diseases CIMD, Hannover, GermanyDepartment for Immunology, Leibniz Research Centre for Working Environment and Human Factors (IfADo) at TU Dortmund, Dortmund, GermanyInstitute for Transplantation Diagnostics and Cell Therapeutics, Medical Faculty and University Hospital Düsseldorf, Heinrich-Heine University Düsseldorf, Düsseldorf, GermanyPrimate Genetics Laboratory, German Primate Center, Leibniz-Institute for Primate Research, Göttingen, GermanyHLA-E expression plays a central role for modulation of NK cell function by interaction with inhibitory NKG2A and stimulatory NKG2C receptors on canonical and adaptive NK cells, respectively. Here, we demonstrate that infection of human primary lung tissue with SARS-CoV-2 leads to increased HLA-E expression and show that processing of the peptide YLQPRTFLL from the spike protein is primarily responsible for the strong, dose-dependent increase of HLA-E. Targeting the peptide site within the spike protein revealed that a single point mutation was sufficient to abrogate the increase in HLA-E expression. Spike-mediated induction of HLA-E differentially affected NK cell function: whereas degranulation, IFN-γ production, and target cell cytotoxicity were enhanced in NKG2C+ adaptive NK cells, effector functions were inhibited in NKG2A+ canonical NK cells. Analysis of a cohort of COVID-19 patients in the acute phase of infection revealed that adaptive NK cells were induced irrespective of the HCMV status, challenging the paradigm that adaptive NK cells are only generated during HCMV infection. During the first week of hospitalization, patients exhibited a selective increase of early NKG2C+CD57− adaptive NK cells whereas mature NKG2C+CD57+ cells remained unchanged. Further analysis of recovered patients suggested that the adaptive NK cell response is primarily driven by a wave of early adaptive NK cells during acute infection that wanes once the infection is cleared. Together, this study suggests that NK cell responses to SARS-CoV-2 infection are majorly influenced by the balance between canonical and adaptive NK cells via the HLA-E/NKG2A/C axis.https://www.tandfonline.com/doi/10.1080/22221751.2024.2361019SARS-CoV-2 infectionadaptive NK cellsHLAENKG2ANKG2C
spellingShingle Mohammad Zahidul Hasan
Maren Claus
Nadine Krüger
Sarah Reusing
Eline Gall
Christina Bade-Döding
Armin Braun
Carsten Watzl
Markus Uhrberg
Lutz Walter
SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression
Emerging Microbes and Infections
SARS-CoV-2 infection
adaptive NK cells
HLAE
NKG2A
NKG2C
title SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression
title_full SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression
title_fullStr SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression
title_full_unstemmed SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression
title_short SARS-CoV-2 infection induces adaptive NK cell responses by spike protein-mediated induction of HLA-E expression
title_sort sars cov 2 infection induces adaptive nk cell responses by spike protein mediated induction of hla e expression
topic SARS-CoV-2 infection
adaptive NK cells
HLAE
NKG2A
NKG2C
url https://www.tandfonline.com/doi/10.1080/22221751.2024.2361019
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