A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis)
Abstract Asian water buffalo (Bubalus bubalis) is the fundamental livestock resource for local rural populations and holds a promising prospect of their milk and meat. Xuyi mountain (XYM) and Haizi (HZ) buffaloes from Yangtze valley comprises of species diversity of Asian water buffaloes. Current mu...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2024-12-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-024-04246-4 |
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| author | Yangyang Shen Zhenjiang An Shuwen Xia Qiang Ding Kunlin Chen Yilong Miao Tao Wang Jifeng Zhong Jianbin Li Xiao Wang Huili Wang |
| author_facet | Yangyang Shen Zhenjiang An Shuwen Xia Qiang Ding Kunlin Chen Yilong Miao Tao Wang Jifeng Zhong Jianbin Li Xiao Wang Huili Wang |
| author_sort | Yangyang Shen |
| collection | DOAJ |
| description | Abstract Asian water buffalo (Bubalus bubalis) is the fundamental livestock resource for local rural populations and holds a promising prospect of their milk and meat. Xuyi mountain (XYM) and Haizi (HZ) buffaloes from Yangtze valley comprises of species diversity of Asian water buffaloes. Current multi-omics enables identification of causal genes and elucidation of genetic regulatory mechanisms underlying complex traits in buffaloes. Here, we conducted the integrated analysis of metabolome and metagenome of rumen fluid, transcriptome and metabolome of blood, and whole genome sequence data from XYM (n = 7) and HZ (n = 10) male buffaloes. Our results revealed the apparent diversity of multi-layer omics profiles between two buffalo species. The built-up multi-omics database supports the discoveries of diversity in Asian water buffalo and potentially serves valuable resources for studying causal regulatory variants and their mechanisms. |
| format | Article |
| id | doaj-art-8a5115efc4e042ecb52abab1504b38c5 |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-8a5115efc4e042ecb52abab1504b38c52024-12-22T12:14:18ZengNature PortfolioScientific Data2052-44632024-12-0111111010.1038/s41597-024-04246-4A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis)Yangyang Shen0Zhenjiang An1Shuwen Xia2Qiang Ding3Kunlin Chen4Yilong Miao5Tao Wang6Jifeng Zhong7Jianbin Li8Xiao Wang9Huili Wang10Institute of Animal Science, Jiangsu Academy of Agricultural SciencesInstitute of Animal Science, Jiangsu Academy of Agricultural SciencesInstitute of Animal Science, Jiangsu Academy of Agricultural SciencesInstitute of Animal Science, Jiangsu Academy of Agricultural SciencesInstitute of Animal Science, Jiangsu Academy of Agricultural SciencesCollege of Animal Science and Technology, Nanjing Agricultural UniversityGuangdong GemPharmatech Co., Ltd.Institute of Animal Science, Jiangsu Academy of Agricultural SciencesInstitute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural SciencesInstitute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural SciencesInstitute of Animal Science, Jiangsu Academy of Agricultural SciencesAbstract Asian water buffalo (Bubalus bubalis) is the fundamental livestock resource for local rural populations and holds a promising prospect of their milk and meat. Xuyi mountain (XYM) and Haizi (HZ) buffaloes from Yangtze valley comprises of species diversity of Asian water buffaloes. Current multi-omics enables identification of causal genes and elucidation of genetic regulatory mechanisms underlying complex traits in buffaloes. Here, we conducted the integrated analysis of metabolome and metagenome of rumen fluid, transcriptome and metabolome of blood, and whole genome sequence data from XYM (n = 7) and HZ (n = 10) male buffaloes. Our results revealed the apparent diversity of multi-layer omics profiles between two buffalo species. The built-up multi-omics database supports the discoveries of diversity in Asian water buffalo and potentially serves valuable resources for studying causal regulatory variants and their mechanisms.https://doi.org/10.1038/s41597-024-04246-4 |
| spellingShingle | Yangyang Shen Zhenjiang An Shuwen Xia Qiang Ding Kunlin Chen Yilong Miao Tao Wang Jifeng Zhong Jianbin Li Xiao Wang Huili Wang A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis) Scientific Data |
| title | A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis) |
| title_full | A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis) |
| title_fullStr | A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis) |
| title_full_unstemmed | A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis) |
| title_short | A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis) |
| title_sort | multi omics database of buffaloes from yangtze valley reveals diversity of water buffalo bubalus bubalis |
| url | https://doi.org/10.1038/s41597-024-04246-4 |
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