Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample
Here, the draft genome sequence of a multi-drug resistant (MDR) Serratia marcescens strain BMD28, isolated from a clinical source from Dhaka, Bangladesh, has been reported. The sequence raw read files were generated using Illumina sequencing technology utilizing genomic DNA from the pure culture of...
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Elsevier
2024-12-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340924010953 |
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| author | K.M. Shayerul Abedin Shayer Sabbir R. Shuvo Ishrat Jabeen Mahmud Hossain Sohidul Islam |
| author_facet | K.M. Shayerul Abedin Shayer Sabbir R. Shuvo Ishrat Jabeen Mahmud Hossain Sohidul Islam |
| author_sort | K.M. Shayerul Abedin Shayer |
| collection | DOAJ |
| description | Here, the draft genome sequence of a multi-drug resistant (MDR) Serratia marcescens strain BMD28, isolated from a clinical source from Dhaka, Bangladesh, has been reported. The sequence raw read files were generated using Illumina sequencing technology utilizing genomic DNA from the pure culture of this strain. The strain has a genome size of around 5.4 million base pairs, a GC content of 59.70 %, and 5,141 coding sequences. We conducted genomic studies using several bioinformatics tools focusing on resistance genes, virulence factors, toxin-antitoxin systems, and pangenome analysis. Strain BMD28 harbored the blaNDM-7 gene in an IncX3 plasmid. A phylogenomic study with S. marcescens strains isolated worldwide revealed that our strain is in the same clade as other strains reported in Bangladesh. The data can be used primarily to understand the genomic content, epidemiology, and evolution of S. marcescens in Bangladesh. The genome sequence data of BMD28 has been deposited in the NCBI database under BioSample accession number SAMN41260295. |
| format | Article |
| id | doaj-art-7c80bd913ce644dd9baf8d8e7b2a1fce |
| institution | Kabale University |
| issn | 2352-3409 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-7c80bd913ce644dd9baf8d8e7b2a1fce2024-11-30T07:11:12ZengElsevierData in Brief2352-34092024-12-0157111133Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSampleK.M. Shayerul Abedin Shayer0Sabbir R. Shuvo1Ishrat Jabeen2Mahmud Hossain3Sohidul Islam4Department of Biochemistry & Microbiology, North South University, Dhaka, BangladeshDepartment of Biochemistry & Microbiology, North South University, Dhaka, BangladeshDepartment of Biochemistry & Microbiology, North South University, Dhaka, BangladeshDepartment of Biochemistry & Molecular Biology, University of Dhaka, Dhaka, BangladeshDepartment of Biochemistry & Microbiology, North South University, Dhaka, Bangladesh; Corresponding author.Here, the draft genome sequence of a multi-drug resistant (MDR) Serratia marcescens strain BMD28, isolated from a clinical source from Dhaka, Bangladesh, has been reported. The sequence raw read files were generated using Illumina sequencing technology utilizing genomic DNA from the pure culture of this strain. The strain has a genome size of around 5.4 million base pairs, a GC content of 59.70 %, and 5,141 coding sequences. We conducted genomic studies using several bioinformatics tools focusing on resistance genes, virulence factors, toxin-antitoxin systems, and pangenome analysis. Strain BMD28 harbored the blaNDM-7 gene in an IncX3 plasmid. A phylogenomic study with S. marcescens strains isolated worldwide revealed that our strain is in the same clade as other strains reported in Bangladesh. The data can be used primarily to understand the genomic content, epidemiology, and evolution of S. marcescens in Bangladesh. The genome sequence data of BMD28 has been deposited in the NCBI database under BioSample accession number SAMN41260295.http://www.sciencedirect.com/science/article/pii/S2352340924010953Serratia marcescensWGSMultidrug resistanceNDM-7Phylogenomic analysis |
| spellingShingle | K.M. Shayerul Abedin Shayer Sabbir R. Shuvo Ishrat Jabeen Mahmud Hossain Sohidul Islam Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample Data in Brief Serratia marcescens WGS Multidrug resistance NDM-7 Phylogenomic analysis |
| title | Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample |
| title_full | Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample |
| title_fullStr | Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample |
| title_full_unstemmed | Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample |
| title_short | Draft genome sequence data of Serratia marcescens strain harboring blaNDM-7 from Dhaka, BangladeshNCBI BioSample |
| title_sort | draft genome sequence data of serratia marcescens strain harboring blandm 7 from dhaka bangladeshncbi biosample |
| topic | Serratia marcescens WGS Multidrug resistance NDM-7 Phylogenomic analysis |
| url | http://www.sciencedirect.com/science/article/pii/S2352340924010953 |
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