PLO3S: Protein LOcal Surficial Similarity Screening
The study of protein molecular surfaces enables to better understand and predict protein interactions. Different methods have been developed in computer vision to compare surfaces that can be applied to protein molecular surfaces. The present work proposes a method using the Wave Kernel Signature: P...
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| Format: | Article |
| Language: | English |
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Elsevier
2024-12-01
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| Series: | Computational and Structural Biotechnology Journal |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2001037023004750 |
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| author | Léa Sirugue Florent Langenfeld Nathalie Lagarde Matthieu Montes |
| author_facet | Léa Sirugue Florent Langenfeld Nathalie Lagarde Matthieu Montes |
| author_sort | Léa Sirugue |
| collection | DOAJ |
| description | The study of protein molecular surfaces enables to better understand and predict protein interactions. Different methods have been developed in computer vision to compare surfaces that can be applied to protein molecular surfaces. The present work proposes a method using the Wave Kernel Signature: Protein LOcal Surficial Similarity Screening (PLO3S). The descriptor of the PLO3S method is a local surface shape descriptor projected on a unit sphere mapped onto a 2D plane and called Surface Wave Interpolated Maps (SWIM). PLO3S allows to rapidly compare protein surface shapes through local comparisons to filter large protein surfaces datasets in protein structures virtual screening protocols. |
| format | Article |
| id | doaj-art-61b56e255459462a9f444446d77b2cf6 |
| institution | Kabale University |
| issn | 2001-0370 |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Computational and Structural Biotechnology Journal |
| spelling | doaj-art-61b56e255459462a9f444446d77b2cf62024-12-19T10:53:16ZengElsevierComputational and Structural Biotechnology Journal2001-03702024-12-0126110PLO3S: Protein LOcal Surficial Similarity ScreeningLéa Sirugue0Florent Langenfeld1Nathalie Lagarde2Matthieu Montes3Corresponding authors.; Laboratoire GBCM, EA7528, Conservatoire National des Arts et Métiers, Hesam Université, 2, rue Conté, Paris, 75003, FranceLaboratoire GBCM, EA7528, Conservatoire National des Arts et Métiers, Hesam Université, 2, rue Conté, Paris, 75003, FranceLaboratoire GBCM, EA7528, Conservatoire National des Arts et Métiers, Hesam Université, 2, rue Conté, Paris, 75003, FranceCorresponding authors.; Laboratoire GBCM, EA7528, Conservatoire National des Arts et Métiers, Hesam Université, 2, rue Conté, Paris, 75003, FranceThe study of protein molecular surfaces enables to better understand and predict protein interactions. Different methods have been developed in computer vision to compare surfaces that can be applied to protein molecular surfaces. The present work proposes a method using the Wave Kernel Signature: Protein LOcal Surficial Similarity Screening (PLO3S). The descriptor of the PLO3S method is a local surface shape descriptor projected on a unit sphere mapped onto a 2D plane and called Surface Wave Interpolated Maps (SWIM). PLO3S allows to rapidly compare protein surface shapes through local comparisons to filter large protein surfaces datasets in protein structures virtual screening protocols.http://www.sciencedirect.com/science/article/pii/S2001037023004750Protein surfaceProtein structureSurface similaritySpectral geometrySurface comparison |
| spellingShingle | Léa Sirugue Florent Langenfeld Nathalie Lagarde Matthieu Montes PLO3S: Protein LOcal Surficial Similarity Screening Computational and Structural Biotechnology Journal Protein surface Protein structure Surface similarity Spectral geometry Surface comparison |
| title | PLO3S: Protein LOcal Surficial Similarity Screening |
| title_full | PLO3S: Protein LOcal Surficial Similarity Screening |
| title_fullStr | PLO3S: Protein LOcal Surficial Similarity Screening |
| title_full_unstemmed | PLO3S: Protein LOcal Surficial Similarity Screening |
| title_short | PLO3S: Protein LOcal Surficial Similarity Screening |
| title_sort | plo3s protein local surficial similarity screening |
| topic | Protein surface Protein structure Surface similarity Spectral geometry Surface comparison |
| url | http://www.sciencedirect.com/science/article/pii/S2001037023004750 |
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