Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China
Solidago canadensis, native to North America, is an invasive species in many areas of the world, where it causes serious damage to natural ecosystems and economic losses. However, a dearth of genetic resources and molecular markers has hampered our understanding of its invasion history. Here, we de...
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Frontiers Media S.A.
2024-12-01
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| Series: | Frontiers in Plant Science |
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| Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2024.1498543/full |
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| author | Yu-Tian Tao Yu-Tian Tao Lu-Xi Chen Ming Jiang Jie Jin Zhong-Shuai Sun Chao-Nan Cai Chao-Nan Cai Han-Yang Lin Han-Yang Lin Allison Kwok Jun-Min Li Jun-Min Li Mark van Kleunen Mark van Kleunen Mark van Kleunen |
| author_facet | Yu-Tian Tao Yu-Tian Tao Lu-Xi Chen Ming Jiang Jie Jin Zhong-Shuai Sun Chao-Nan Cai Chao-Nan Cai Han-Yang Lin Han-Yang Lin Allison Kwok Jun-Min Li Jun-Min Li Mark van Kleunen Mark van Kleunen Mark van Kleunen |
| author_sort | Yu-Tian Tao |
| collection | DOAJ |
| description | Solidago canadensis, native to North America, is an invasive species in many areas of the world, where it causes serious damage to natural ecosystems and economic losses. However, a dearth of genetic resources and molecular markers has hampered our understanding of its invasion history. Here, we de novo assembled 40 complete chloroplast genomes of Solidago species, including 21 S. canadensis individuals, 15 S. altissima individuals, and four S. decurrens individuals, the sizes of which ranged from 152,412 bp to 153,170 bp. The phylogenetic trees based on the complete chloroplast genome sequences and nuclear genome-wide SNP data showed that S. canadensis and S. altissima cluster together and form a monophyletic pair, as sister to S. decurrens, indicating the existence of the S. canadensis L. complex in China. Three potential introduction pathways were identified. The chloroplast-genome structure and gene contents are conservative in the genomes of the S. canadensis L. complex and S. decurrens. The analysis of sequence divergence indicated five variable regions, and 10 chloroplast protein-coding genes that underwent positive selection were identified. Our findings shed new light on the invasion history of S. canadensis and the data sets generated in this study will facilitate future research on its chloroplast genome evolution. |
| format | Article |
| id | doaj-art-4c91e036df2248e2b7162e37b3a078a5 |
| institution | Kabale University |
| issn | 1664-462X |
| language | English |
| publishDate | 2024-12-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj-art-4c91e036df2248e2b7162e37b3a078a52024-12-20T06:29:15ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2024-12-011510.3389/fpls.2024.14985431498543Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into ChinaYu-Tian Tao0Yu-Tian Tao1Lu-Xi Chen2Ming Jiang3Jie Jin4Zhong-Shuai Sun5Chao-Nan Cai6Chao-Nan Cai7Han-Yang Lin8Han-Yang Lin9Allison Kwok10Jun-Min Li11Jun-Min Li12Mark van Kleunen13Mark van Kleunen14Mark van Kleunen15Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaSchool of Electronics and Information Engineering, Taizhou University, Taizhou, ChinaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaSchool of Electronics and Information Engineering, Taizhou University, Taizhou, ChinaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaSchool of Advances Study, Taizhou University, Taizhou, ChinaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaSchool of Advances Study, Taizhou University, Taizhou, ChinaEnvironmental and Life Sciences Graduate Program, Trent University, Peterborough, ON, CanadaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaSchool of Advances Study, Taizhou University, Taizhou, ChinaZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou University, Taizhou, ChinaSchool of Advances Study, Taizhou University, Taizhou, ChinaDepartment of Biology, University of Konstanz, Konstanz, GermanySolidago canadensis, native to North America, is an invasive species in many areas of the world, where it causes serious damage to natural ecosystems and economic losses. However, a dearth of genetic resources and molecular markers has hampered our understanding of its invasion history. Here, we de novo assembled 40 complete chloroplast genomes of Solidago species, including 21 S. canadensis individuals, 15 S. altissima individuals, and four S. decurrens individuals, the sizes of which ranged from 152,412 bp to 153,170 bp. The phylogenetic trees based on the complete chloroplast genome sequences and nuclear genome-wide SNP data showed that S. canadensis and S. altissima cluster together and form a monophyletic pair, as sister to S. decurrens, indicating the existence of the S. canadensis L. complex in China. Three potential introduction pathways were identified. The chloroplast-genome structure and gene contents are conservative in the genomes of the S. canadensis L. complex and S. decurrens. The analysis of sequence divergence indicated five variable regions, and 10 chloroplast protein-coding genes that underwent positive selection were identified. Our findings shed new light on the invasion history of S. canadensis and the data sets generated in this study will facilitate future research on its chloroplast genome evolution.https://www.frontiersin.org/articles/10.3389/fpls.2024.1498543/fullSolidagochloroplast genomephylogenetic analysisintroduction pathwaysmolecular marker |
| spellingShingle | Yu-Tian Tao Yu-Tian Tao Lu-Xi Chen Ming Jiang Jie Jin Zhong-Shuai Sun Chao-Nan Cai Chao-Nan Cai Han-Yang Lin Han-Yang Lin Allison Kwok Jun-Min Li Jun-Min Li Mark van Kleunen Mark van Kleunen Mark van Kleunen Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China Frontiers in Plant Science Solidago chloroplast genome phylogenetic analysis introduction pathways molecular marker |
| title | Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China |
| title_full | Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China |
| title_fullStr | Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China |
| title_full_unstemmed | Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China |
| title_short | Complete chloroplast genome data reveal the existence of the Solidago canadensis L. complex and its potential introduction pathways into China |
| title_sort | complete chloroplast genome data reveal the existence of the solidago canadensis l complex and its potential introduction pathways into china |
| topic | Solidago chloroplast genome phylogenetic analysis introduction pathways molecular marker |
| url | https://www.frontiersin.org/articles/10.3389/fpls.2024.1498543/full |
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