PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences

PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences

BackgroundThe study of sample taxonomic composition has evolved from direct observations and labor-intensive morphological studies to different DNA sequencing methodologies. Most of these studies leverage the metabarcoding approach, which involves the amplification of a small taxonomically-informati...

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Bibliographic Details
Main Authors: Benjamin Dubois, Mathieu Delitte, Salomé Lengrand, Claude Bragard, Anne Legrève, Frédéric Debode
Format: Article
Language:English
Published: Frontiers Media S.A. 2024-12-01
Series:Frontiers in Bioinformatics
Subjects:
long-read high-throughput sequencing
accuracy
clustering
polishing
duplex reads
microbiome
Online Access:https://www.frontiersin.org/articles/10.3389/fbinf.2024.1483255/full
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