Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning

Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning

Abstract Background Long terminal repeats (LTRs) represent important parts of LTR retrotransposons and retroviruses found in high copy numbers in a majority of eukaryotic genomes. LTRs contain regulatory sequences essential for the life cycle of the retrotransposon. Previous experimental and sequenc...

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Bibliographic Details
Main Authors: Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovsky, Matej Lexa
Format: Article
Language:English
Published: BMC 2024-12-01
Series:BioData Mining
Subjects:
Eukaryote
Repeat
Transposable elements
Deep learning
CNN-LSTM
DNABERT
Online Access:https://doi.org/10.1186/s13040-024-00410-z
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